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Food perception without ingestion leads to metabolic changes and irreversible...
Background Developmental physiology is very sensitive to nutrient availability. For instance, in the nematode Caenorhabditis elegans, newly hatched L1-stage larvae require food... -
Regulation of dual specificity phosphatases in breast cancer during initial t...
Background 25% of breast cancer patients suffer from aggressive HER2-positive tumours that are characterised by overexpression of the HER2 protein or by its increased tyrosine... -
Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phy...
Background Prokaryotic 16S ribosomal RNA (rRNA) sequences are widely used in environmental microbiology and molecular evolution as reliable markers for the taxonomic... -
NEAT: a framework for building fully automated NGS pipelines and analyses
Background: The analysis of next generation sequencing (NGS) has become a standard task for many laboratories in the life sciences. Though there exists several tools to support... -
Pipeline design to identify key features and classify the chemotherapy respon...
Background: During the last decade, the interest to apply machine learning algorithms to genomic data has increased in many bioinformatics applications. Analyzing this type of... -
Discovery of novel estrogen-related receptor α inverse agonists by virtual sc...
Discovery of novel estrogen-related receptor α inverse agonists by virtual screening and biological evaluation -
A multi-animal tracker for studying complex behaviors
Background Animals exhibit astonishingly complex behaviors. Studying the subtle features of these behaviors requires quantitative, high-throughput, and accurate systems that can... -
Emergence of wheat blast in Bangladesh was caused by a South American lineage...
Made available in DSpace on 2018-12-11T17:06:11Z (GMT). No. of bitstreams: 0 Previous issue date: 2016-10-03 Background: In February 2016, a new fungal disease was spotted in... -
GOTA: GO term annotation of biomedical literature
Background Functional annotation of genes and gene products is a major challenge in the post-genomic era. Nowadays, gene function curation is largely based on manual assignment... -
Optimized pipeline of MuTect and GATK tools to improve the detection of somat...
Background Detecting somatic mutations in whole exome sequencing data of cancer samples has become a popular approach for profiling cancer development, progression and... -
Central peptidergic modulation of peripheral olfactory responses
Background Animal olfactory systems detect volatile environmental chemicals and integrate this information to direct the discovery of food and mates as well as danger avoidance.... -
Significance evaluation in factor graphs
Background Factor graphs provide a flexible and general framework for specifying probability distributions. They can capture a range of popular and recent models for analysis of... -
Inferring miRNA sponge co-regulation of protein-protein interactions in human...
Background Recent studies have shown that the crosstalk between microRNA (miRNA) sponges plays an important role in human cancers. However, the co-regulation roles of miRNA... -
An industry perspective of crystallography: its communities and its education...
InGenious, so far the largest European education project clearly indicated one of the most important questions of modern education: optimizing the role of industry in education... -
Roar: detecting alternative polyadenylation with standard mRNA sequencing lib...
Background Post-transcriptional regulation is a complex mechanism that plays a central role in defining multiple cellular identities starting from a common genome. Modifications... -
BAMQL: a query language for extracting reads from BAM files
Background It is extremely common to need to select a subset of reads from a BAM file based on their specific properties. Typically, a user unpacks the BAM file to a text stream... -
SCNS: a graphical tool for reconstructing executable regulatory networks from...
Background Reconstruction of executable mechanistic models from single-cell gene expression data represents a powerful approach to understanding developmental and disease... -
Estimating cumulative pathway effects on risk for age-related macular degener...
Background Age-related macular degeneration (AMD) is the leading cause of irreversible visual loss in the elderly in developed countries and typically affects more than 10 % of... -
Deciphering the signaling mechanisms of the plant cell wall degradation machi...
Background The gene expression and secretion of fungal lignocellulolytic enzymes are tightly controlled at the transcription level using independent mechanisms to respond to... -
phylotree.js - a JavaScript library for application development and interacti...
Background While several JavaScript packages for visualizing phylogenetic trees exist, most are best characterized as frameworks that are designed with a specific set of tasks...