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Analysis pipelines included in "Conbase: a software for unsupervised discover...
This repository contains the analysis pipelines included in "Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read... -
RECAP Platform
RECAP is a commercial platform that integrates satellite remote sensing and user-generated data into added value services, co-designed and co-created by public authorities,... -
Supplemental Material for Astrophysical Journal paper "Improved Coupling of H...
A Jupyter notebook containing several derivations of equations in the paper "Improved Coupling of Hydrodynamics and Nuclear Reactions via Spectral Deferred Corrections" -
A general proof certification framework for modal logic - Implementation
This archive contains the lambda-prolog implementation of a general proof certification framework for modal logic -
Poly-(3-hexylthiophene) Model and Code for Molecular Dynamic Simulations
Here we present files necessary for simulating our united-atom poly-(3-hexylthiophene) model in molecular dynamics. The input file "P3HT_Blends.py" acts a wrapper... -
Parameter Calculator
The software "Parameter Calculation" serves as a demonstration for calculating parameters as part of my bachelor thesis "Learning Analytics in Flipped Classroom -... -
Dicty Tracking: A standalone tool for fast and easy tracking of migrating Dic...
Dicty Tracking is a free, fast and easy-to-use standalone tool for semi-automatic tracking of migrating Dictyostelium discoideum cells from phase-contrast time-lapse image... -
NationalGenomicsInfrastructure/piper: v1.4.0
The release notes for this release are available here: https://github.com/NationalGenomicsInfrastructure/piper/releases/tag/v... This release "re-tags" 70eb84f to allow Zenodo... -
TractSeg pretrained weights - tract_segmentation
Pretrained weights for TractSeg for output type "tract_segmentation". -
TractSeg pretrained weights - endings_segmentation
Pretrained weights for TractSeg for output type "endings_segmentation". -
Archive for synthetic model SIRE OUU implementation
The python scripts and jupyter notebook of the synthetic model OUU SIRE nitrate loading implementation described in "A non-intrusive approach for efficient stochastic... -
MitoS segmentation tool (GPU) for Linux
The MitoS segmentation tool (GPU) is an easy-to-use GUI-based segmentation tool that enables biologists to use the pretrained deep learning model MitoSegNet to segment... -
droidcolors: Beta for conference
Droidcolors will parse a .dex file and create an image file representing the internal structure of the file. Related paper: Enriching Reverse Engineering through Visual... -
R scripts for "Noise model estimation with application to gene expression"
R - scripts for the paper: Zhornikova P., Golyandina N., Spirov A. "Noise model estimation with application to gene expression" -
Decoding CUDA Binary artifact
This is a software artifact for our paper "Decoding CUDA Binary", published in CGO'19 (International Symposium on Code Generation and Optimization). -
Worst-Case Analysis of Digital Control Loops with Uncertain Input/Output Timing
Code and data for the publication "Worst-Case Analysis of Digital Control Loops with Uncertain Input/Output Timing" by M. Gaukler and P. Ulbrich at ARCH2019 (Workshop... -
Nationalgenomicsinfrastructure/Piper: V1.4.0 Release To Setup Zenodo Integration
The release notes for this release are available here: https://github.com/NationalGenomicsInfrastructure/piper/releases/tag/v... This release "re-tags" 70eb84f to allow Zenodo... -
github.com/denis-yuen/bcellmagic
B cell repertoire analysis pipeline with immcantation framework. Usage: The typical command for running the pipeline is as follows: nextflow run... -
RFixer: a tool for repairing complex regular expressions using examples
This artifact contains the virtual machine image that has RFixer installed. RFixer is a tool for repairing complex regular expressions using examples. Given an incorrect...
