Synthetic promoters are commonly used tools for circuit design or high level protein production. Promoter engineering efforts in yeasts, such as Saccharomyces cerevisiae and...

Data from Roadmap project in GEO database.

Data from ENCODE project in GEO database (or DCC Accession #).

Despite the central importance of transcriptional regulation in biology, it has proven difficult to determine the regulatory mechanisms of individual genes, let alone entire...

Computational analysis of promoters is hindered by the complexity of their architecture. In less studied genomes with complex organization, false positive promoter predictions...

The let-7 family of miRNAs have been shown to control developmental timing in organisms from C. elegans to humans; their function in several essential cell processes throughout...

Promoter classification accuracy.

GO categories that are significantly different between three TF classes.

DD enriched motifs.

Alignment rate to Nematostella vectensis genome (Genome version: Nemvec1).

RNA-Seq dataset quality.

Big biomedical data create exciting opportunities for discovery but make it difficult to capture analyses and outputs in forms that are findable, accessible, interoperable, and...

The listed primer sequences were used to generate plasmids for Sort-Seq experiments or for use in creating strains with mutated operators or LacI.

The listed operator sequences were used to evaluate energy matrix predictions. They are mutated relative to the O1 lac operator. The predicted binding energy was generated using...

Germin-like proteins (GLPs) are involved in biotic and abiotic stress tolerance in different plant species. Rice (Oryza sativa L.) genome contains about 40 GLP family member...

Treatments common motifs.

To tolerate many acute and chronic oxidative stress-producing agents that exist in the environment, organisms have evolved many classes of signal transduction pathways,...

Description of unique rice GLP (OsGLP) genes and their promoter regions.

Data sizes are in GB. Times are in hours on a 32-core AWS node; they sum to 2,149.1 node hours or 68,771 core hours. DNase: DNase Hypersensitivity (DNase-seq) data from ENCODE....

FAIRness assessment derived using FAIRShake.