Primer sequences used in the study, NCBI reference sequences, and amplicon sizes (base pairs).

Performance metrics of models for predicting OS and EFS in Versteeg and Target cohorts. This spreadsheet lists the performance metrics of models trained from SEQC cohort. Models...

(A) Average distribution of TBP peak-pairs around each tRNA TSS. (B) TBP peak density separated by forward and reverse strand orientation (blue and red colors, respectively)...

The LTD pathway was found to be overrepresented in the genes pinpointed by our joint LD and linkage analysis of composing.

Some hypoxia-response DEGs in the RNA-seq.

Relationship of MITF ChIP-seq peaks to the transcription start site (TSS) of innate immune genes.

Linear relationships between qRT-PCR data and RNA-Seq data of related genes. The x-axis indicates the qRT-PCR log2 expression ratios; the y-axis indicates the RNA-Seq data...

Initial configuration. Single stranded overhang in invading strand, length = 30 bp Initial configuration. Single stranded overhang in invading strand, length = 30 bp

*Mandatory NCBI BioSample attributes in the “Pathogen: clinical or host-associated” version 1.0 package.

SNP selection of HapMap genotype data. This file contains a list of HapMap SNP identifiers used for our analyses. rsid (reference SNP identifier) refers to the first column of...

Additional file 10: Data S8. RNA-seq data for genes involved photosynthesis.

Phosphorylation of the RNAPII CTD by Kin28 and Ctk1 stimulates the recruitment of Rpd3S to the CTD. DSIF (Spt4/Spt5) counteracts the recruitment of Rpd3S but its phosphorylation...

Identification for individuals included in merged Illumina and Affymetrix data

Summary of the results of mapping RNA-Seq reads to the complete G. bimaculatus prothoracic ganglion assembly.

The lists of significantly differentially expressed coding genes and lncRNAs identified by HTA and RNA-seq platforms. (XLSX 2698Â kb)

Validation of RNA-seq data with qPCR. (XLSX 9 kb)

EBV lytic transcripts not meeting high confidence CAGE-seq analysis criteria.

RT-qPCR output and comparison of RT-qPCR and RNA-Seq estimates of gene expression. (XLSX 26 kb)

Division of patients into groups according to the findings in SWI and perfusion imaging.

Initial configuration. Double stranded overhang in invading strand, length = 15 bp