Macrophylogenies that were included in analyses.

Matrix used for the tutorial

Supplemental Data 4: Trees recovered from parsimony analysis of Diplobathrids with Cleiocrinus included.

Nexus file with character matrix for empirical example. Also available from MorphoBank (http://morphobank.org/permalink/?P3189). See Appendix 3 for more information.

This repo hosts modified BAMM code that we used in our project exploring theoretical issues and statistical problems with BAMM.

Ages file for the tutorial data set

Data from acute exposure of Ambystoma maculatum to road salt

Data from acute exposure experiment of Rana sylvatica to road salt.

Pliocene occurrence data for species. Note that these data were trimmed so that only one occurrence resides per environmental pixel. Please see Dataset S1 for information on the...

At this URL are the releases of REvoSim. Each release contains the source code for REvoSim and EnviroGen. Further details can be found within the readmes. Releases also include...

Morphological and phylogenetic data for Poseidonamicus populations

Supplementary Information: BAMM Assessment

Loadings, eigenvalues and cumulative amount of variation explained by four of the components (PC's) obtained from a PCA analysis using the log-transformed volume or the relative...

Excel spread sheets with basic taxa, grid cell and biome information

Phylogenetic datasets used in our analyses. Each dataset is a nexus file including a tree distribution with 100 trees (except for planktonic foraminifera).

Input and output files of BAMM analyses conducted under six different values for the prior on the expected number of diversification shifts (0.1, 1, 5, 10, 50, 100). (1) Control...

Simulating trees under the GeoSSE model requires the C program SimTreeSDD. A snapshot of the code used for the analyses in the paper is archived by Systematic Biology as a...

A (zipped) shape file with all botanical countries (TDWG level 3 units) worldwide, data to be used with R script

Description of sampled thalli for this study

R code for the tutorial