specimen voucher information

9pt-reference

ZIP archive of two SNP datasets used for phylogenetic analyses in FASTA format, homozygous positions only (nomenclature see VCF files).

Physiological and behavioural phenotype data on 1,219 mice from the Carworth Farms White (CFW) outbred mouse stock. The data are stored in comma-delimited ("csv") format, with...

GBS pipeline commands for SNP discrovery including Stacks and post-filtering with populations and Plink

This file contains the sorted .bam files for individuals from the Lone Mountain lek.

Link to treebase data. ML and BCA trees: http://purl.org/phylo/treebase/phylows/study/TB2:S14102

phenotype and experimental design

This file contains the sorted .bam files for individuals from the Quartz Road lek.

This file contains information on the regular expressions we used to remove adapter pollution from our sequence data.

This script converted the Phylip file that was generated by ipyrad into a Fasta file.

This file contains the sorted .bam files for individuals from the Pony Express lek.

This archive contains the raw RAD sequencing data files in paired-end FastQ format for the two replicated Labeobarbus natalensis samples used in the study, BLU004 (BLA004) and...

This file contains the sorted .bam files for individuals from the Big Pole lek.

9py-reference

reference_pd

HapMap hmc files generated by UNEAK (Universal Network Enabled Analysis Kit) filter with default settings.

HapMap hmp file generated by UNEAK (Universal Network Enabled Analysis Kit) filter with default settings

3pines-reference

filtered-geno-0.2-maf-0.05-mind-0.9