This resource contains dataset used in the paper describing the SDG software framework: "A Sequence Distance Graph framework for genome assembly and analysis"....

Composite two point linkage estimates and standard errors for each linkage group in the Culex pipiens genetic map.

Summary of the genomes used.

Next-generation sequencing read statistics and sequencing coverage for the sample datasets.

Prokaryote genomes containing at least 2 kbp of likely human originated (LHO) sequence.

Non-mammal vertebrate genomes containing at least 2 kbp of likely human originated (LHO) sequence.

Mammalian genomes containing at least 2 kbp of likely human originated (LHO) sequence.

Non-vertebrate eukaryote genomes containing at least 2 kbp of likely human originated (LHO) sequence.

CamDro2 genome gzipped (www.gzip.org/ ) FASTA file, chromosomes are identified by >1,>2,...,>36,>X (for chromosomes 1,2,...,36,X). There is no Y chromosome as the...

Contamination in genome assembly can lead to wrong or confusing results when using such genome as reference in sequence comparison. Although bacterial contamination is well...

Type-specific genomic regions and gene content.

This is the version of riboSeed referenced in the bioRxiv manuscript and in journal submission.  Future releases will be linked directly with Zenodo, but because this was set up...

Unknown sequences, or gaps, are present in many published genomes across public databases. Gap filling is an important finishing step in de novo genome assembly, especially in...