GPS data for isolates characterized in the survey

Scripts, data files and results of IM analysis

A nexus (.nxs, .nex) file for use in parsimony and maximum likelihood analyses

*Beast XML input file for species delimitation analysis (hypothesis 1). This file includes data from both markers (COI and H3) and individuals sorted into four species (Sicarius...

The haplotype file which is part of the input to Arlequin. Note you need the Arlequin project file to be in the same directory.

Supporting Appendixes. (DOC)

Phylogenetic dataset (TNT) used in the study. The TNT file can be converted to .nex from the ‘export (nexus format)’ function in TNT, or alternatively can be opened by ‘open...

PCT =  Pacific Carbon Trust; StC =  Carbon Storage * CC; SeqC =  Carbon. Sequestration potential * CC; TotC = StC+SeqC.

FASTQ file containing filtered, de-mulitplexed, and collapsed HiSeq (Illumina) sequencing reads corresponding to the Tayassu pecari enriched genomic library. See main...

MUSK_I3_File: Bee hummingbirds sequences of the Z-linked muscle, skeletal, receptor tyrosine kinase intron 3 (nuDNA).

The TalentiEtAl_2017.ped file contains the unphased genotype data for all the 929 animals described in the paper: "Genomic analysis suggests KITLG is responsible for a roan...

analyses

Benthic bathomes and the ecological and biological events used to define them.

Google Earth modified polygon file. Place in same directory as analysis and species trees file, and make sure they are referenced correctly in the xml file.

ML analyses and associated bootstrapping (1,000 replicates) using the MPI-parallelized RAxML 7.0.4 software (Stamatakis, 2006b). GTRCAT approximation of models (Stamatakis,...

This file is a direct download from the Paleobiology Database which contains global occurrences for Tetrapodomorpha from the Carboniferous to early Permian.

P = porous, NP = non-porous, BE = barrier-end. ORPI = Organ Pipe Cactus National Monument, BA = Buenos Aires National Wildlife Refuge, NRD = Nogales Ranger District (Coronado...

Sample size, estimates of haplotype (H) and nucleotide diversity (π), Tajima’s D and Fu’s Fs results for the sample sites with six or more individuals.

Conservation initiatives to protect and restore valued species and communities in human-dominated landscapes face huge challenges linked to the cost of acquiring habitat. We ask...

Ovary weight data of Odax pullus in the Hauraki Gulf and at Stewart Island (New Zealand). Ovary weight is wet weight of whole gonads.