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Identifying audiences of e-infrastructures--tools for measuring impact.
Research evaluation should take into account the intended scholarly and non-scholarly audiences of the research output. This holds too for research infrastructures, which often... -
Dealing with Data: A Case Study on Information and Data Management Literacy
Our scientific body of knowledge is built upon data, which is carefully collected, analyzed, and presented in scholarly reports. We are now witnessing a dramatic shift in our... -
Making transmission models accessible to end-users: The example of TRANSFIL.
Here, we introduce a newly developed online web interface for the lymphatic filariasis transmission model TRANSFIL, which is validated for Wucheria bancrofti transmission and... -
LabTrove: A Lightweight, Web Based, Laboratory "Blog" as a Route towards a Ma...
BackgroundThe electronic laboratory notebook (ELN) has the potential to replace the paper notebook with a marked-up digital record that can be searched and shared. However, it... -
Supporting diversity in science through social networking.
Science is disproportionately produced at research centers within a few select regions [1],[2]. This distribution contributes to “brain drain”—the cultural and geographical... -
webpic: A flexible web application for collecting distance and count measurem...
: Despite increasing ability to store and analyze large amounts of data for organismal and ecological studies, the process of collecting distance and count measurements from... -
The Role of Social Media in Recruiting for Clinical Trials in Pregnancy
Background Recruitment of women in the periconceptional period to clinical studies using traditional advertising through medical establishments is difficult and slow. Given... -
Using citizen science to expand the global map of landslides: Introducing the...
Robust inventories are vital for improving assessment of and response to deadly and costly landslide hazards. However, collecting landslide events in inventories is difficult at... -
Research blogs and the discussion of scholarly information.
The research blog has become a popular mechanism for the quick discussion of scholarly information. However, unlike peer-reviewed journals, the characteristics of this form of... -
Ten Simple Rules for Taking Advantage of Git and GitHub.
Bioinformatics is a broad discipline in which one common denominator is the need to produce and/or use software that can be applied to biological data in different contexts. To... -
Using Crowdsourcing to Evaluate Published Scientific Literature: Methods and ...
Systematically evaluating scientific literature is a time consuming endeavor that requires hours of coding and rating. Here, we describe a method to distribute these tasks... -
Open collaborative writing with Manubot.
Open, collaborative research is a powerful paradigm that can immensely strengthen the scientific process by integrating broad and diverse expertise. However, traditional... -
Opportunities for Web-Based Indicators in Environmental Sciences
This paper proposes a set of web-based indicators for quantifying and ranking the relevance of terms related to key-issues in Ecology and Sustainability Science. Search engines... -
Enhancing reproducibility in scientific computing: Metrics and registry for S...
Here we present Singularity Hub, a framework to build and deploy Singularity containers for mobility of compute, and the singularity-python software with novel metrics for... -
Macro-Indicators of Citation Impacts of Six Prolific Countries: InCites Data ...
Using the InCites tool of Thomson Reuters, this study compares normalized citation impact values calculated for China, Japan, France, Germany, United States, and the UK... -
Ten Simple Rules of Live Tweeting at Scientific Conferences
The power of mobile communications has increased dramatically in recent years such that these devices (smartphone or tablet computer) can be used productively to do science [1].... -
Evaluation of an Online Platform for Multiple Sclerosis Research: Patient Des...
Objectives: To assess the potential of an online platform, PatientsLikeMe.com (PLM), for research in multiple sclerosis (MS). An investigation of the role of body mass index... -
Wide-Open: Accelerating public data release by automating detection of overdu...
Open data is a vital pillar of open science and a key enabler for reproducibility, data reuse, and novel discoveries. Enforcement of open-data policies, however, largely relies... -
Escape Excel: A tool for preventing gene symbol and accession conversion errors
Background Microsoft Excel automatically converts certain gene symbols, database accessions, and other alphanumeric text into dates, scientific notation, and other numerical... -
Revisiting Mental Simulation in Language Comprehension: Six Replication Attempts
The notion of language comprehension as mental simulation has become popular in cognitive science. We revisit some of the original empirical evidence for this. Specifically, we...