Source code. The source code developed are available in the Bitbucket repository: https://github.com/califano-lab/GPU-ARACNE . (ZIP 25 kb)

List of the benchmark problems used in the comparisons.

MIDER toolbox. This compressed file contains the MIDER toolbox, which is implemented in Matlab. It includes all the datasets used in this article, the source code of the MIDER...

aSpecified with reference to Cook [30] and Waage et al. [36] using distributions defined in Biosecurity Australia [31]; b Derived from Sapoukhina et al. [37]; c ABS [6], Note...

Table S1. List of antibodies used for ChIP-seq (XLSX 9 kb)

Dataset S9. Sex-biased Genes Shared between Human and Mouse Adult Hearts (XLSX 13 kb)

Background The size and complexity of published biochemical network reconstructions are steadily increasing, expanding the potential scale of derived computational models....

Background The Algorithm for the Reconstruction of Accurate Cellular Networks (ARACNE) represents one of the most effective tools to reconstruct gene regulatory networks from...

Dataset S1. Genes in blue/violet module eigengene (XLSX 29 kb)

Table S2. Accession and metadata of all samples analyzed in this study (XLSX 10 kb)