Additional file 2. Complete sequence data of the hemagglutinins identified as leading to recombination-like events listed in Additional file 1 and Table 3 are included as text...

Summary of de novo transcriptome assembly for ASGV-infected and ASGV-free apple samples. We assembled raw data from two different libraries using the Trinity program. The...

Detailed information on RNA-Seq data used in this study. (XLSX 10 kb)

Raw recombination data

SNVs of ASGV isolate Fuji in ASGV-infected sample. (XLSX 17 kb)

SNVs of ASGV isolate GD in ASGV-infected sample. (XLSX 17Â kb)

Files and data used to create figure S2

Blast result to identify ASGV-associated contigs from ASGV-infected pear mRNA-Seq data. (XLSX 8Â kb)

Blast result to identify ASGV-associated contigs assembled from ASGV-infected sRNA data. (XLSX 10Â kb)

Supplementary Information for: Early Succession on Slag Compared to Urban Soil: A Slower RecoveryS1 File. Supplemental information: methods and results. Detailed history of...

Files and data used to create figure 4

All of the raw count data associated with this manuscript

Summary of de novo transcriptome assembly from the pear mRNA data. (XLSX 7Â kb)

assay_selection_lines_gradient_trial

reciprocal_transplants

Population scaled recombination rate in 8 populations of Ficedula flycatchers

Background Proper DNA replication is essential for faithful transmission of the genome. However, replication stress has serious impact on the integrity of the cell, leading to...

SNVs of ASGV isolate Cuiguan in ASGV-infected sample. (XLSX 13 kb)

Detailed information of complete genome sequences for ASGV and CTLV isolates used for phylogenetic and recombination analyses. (XLSX 10Â kb)

Collection of annotated genomes used in the analysis of this study