List of RT-PCR primers. (XLSX 10 kb)

All_bacteria_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression by SEED Subsystem hierarchies between ICD and control samples for...

Additional file 5: Table S5. Normalized sequencing read values for the sum of all T. gondii gene isoforms. TPM values calculated by RSEM for each gene after aligning reads to...

Amino acid alignment file (FASTA format) of ultraviolet-sensitive opsin data used in the reconstruction of the UVS opsin topology.

List of genes (A) and isoforms (B) showing male- or female biased expression. (XLSX 481 kb)

Is a table listing summary statistics of RNA-seq. (XLSX 11Â kb)

Additional file 13: Table S11. KEGG pathway enriched the differentially expressed genes (CON VS SCI upregulated genes).

Table S1. The list of qRT-PCR primers for signature genes. Table S2. Normalized expression levels (median and MAD) obtained by qRT-PCR from 45 independent FFPE samples and the...

Statistics of k-mer counting. Total number of k-mers in each sample, total number of valid k-mers in each sample (k-mers shared by at least two samples) and the percentage of...

Differentially expressed genes in ovaries of D. melanogaster induced by Wolbachia infection. (XLS 57 kb)

mRNAs bioinformatics analysis.xlsx. (XLSX 218 kb)

Additional file 3: Table S3. List of 210 upregulated DEGs expressed between the SCI group and the LV_SCI group.

This archive contains R scripts used in the study to infer differential expression. There are four scripts, each used for each of the four transcriptomes analyzed.

Dataset 2. List of nodes included in different modules with stringent edge weight thresholds used for construction of gene regulatory networks. (XLSX 2433 kb)

The Excel file provides the annotation information, including original source transcriptome, for each contig in the reference transcriptome. The ReadMe files describes the...

M. guttatus inbred line IM767 - stem transcriptome "T2" - sample JS5

Additional file 5: Table S5. The significant of GO terms enriched between the SCI group and the LV_SCI group 210 upregualted DEGs.

List of used RNA-seq data. Including 168 RNA-seq analyses for 20 experiment groups of four Gossypium species. (XLSX 36 kb)

Primers used for qPCR. (XLSX 11 kb)

Characterization of the Double Transgenic GM-csf (DTGM) mouse model. In the absence of influenza A virus infection, GM-CSF levels (A) in bronchoalveolar lavage (BAL) fluid was...