This dataset contains genomes, proteomes and protein alignments mentioned in Hugoson et al (2019). It has been used to analyze the evolution of host-adaptation in the order...

This file includes the raw physiological trait data used for phylogenetic signal calculations.

Complete assembly of the Moca3 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 2745m depth. See the associated publication for...

Microsoft Excel worksheet listing the Filename, sample, # trimmed paired reads, #RAW reads, sample code, andRepository.

R code to replicate all analyses, as well as data files needed for some of the calculations.

S15D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Telluraves alignment (higher-level subset), under split-concept resolution. Total = 81 MIR....

This file contains all the phylogenetic trees associated with this study.

This ZIP file includes the genetic and morphological matrices that were used to perform the BPP and iBPP analyses.

Supplementary File Archives of "Decisive Datasets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects"

This file contains data matrices used in this study.

Complete assembly of the Moca4 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 5002m depth. See the associated publication for...

This file contains all Anchored Hybrid Enrichment (AHE)-derived raw sequencing reads for the article "Museum specimens provide phylogenomic data to resolve relationships of...

OPH04 trimmed fastq.gz read files - 192 files, 96 samples

Supplementary Information for: Early Succession on Slag Compared to Urban Soil: A Slower RecoveryS1 File. Supplemental information: methods and results. Detailed history of...

Zip archive containing raw contig assemblies (fasta format) for all samples used in this study.

S2B File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Psittaciformes alignment, with coverage globally applied. Total = 108 MIR. File format: .csv.

Zipped fasta format datamatrix of 417 samples for 1494 exons used to infer associated RAxML phylogenetic tree. See main ReadMe file for details.

Complete assembly of the Tara Oceans metagenome (SRA accession: ERR599156). Metagenome was derived from Pacific Ocean sampled at 140m depth. See the associated publication for...

Complete assembly of the Moca1 metagenome (SRA accession: SRP081826). Metagenome was derived from Atlantic Ocean sampled at 100m depth. See the associated publication for...

This is the nucleotide alignment used in Rota-Stabelli e al. (in review Syst. Biol.). It is originally from Regier et al. 2010 - Nature. See Main text for details.