Specimen information and raw data

Runs the marginal likelihood estimator for the columbine flower example under the latent multivariate Brownian diffusion model.

Runs the triggerfish example under the multivariate Brownian diffusion model. This file is designed to measure a speed comparison between models.

NEXUS file containing total concatenated mDNA, rDNA & nDNA and PAUP* 4.0 analysis commands from Jackson et al. ISE

Table displaying results of stratigraphic congruence analyses.

Morphological data file used for analysis

Main data file for Hamm and Fordyce 2016

This folder contains Garli configuration files for EF1alpha, period, and the concatenated COI and COII datasets.

Alloprhyne_resplendens_Total

This is a Mesquite file. Contact Rudolf Meier for questions regarding this file.

The data and code for running the analysis for HA. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 3000 kb)

The data and code for running the analysis for NP. This is a 7-Zip file containing an iPython notebook and the relevant data files. (7Z 2910 kb)

This is a Mesquite file that contains the stepmatrix. Contact Rudolf Meier for questions regarding this file.

All morphological data summarized with references

NEXTRAD run 2 (part 1 of 2)

Configuration file with fossil calibrations used in treePL

CSV files containing information on the GC-MS data (GC: 7890A; MS: 5975C; Agilent Technologies, Waldbronn, Germany) for the Trichomalopsis outgroup samples, obtained with...

TPS file for morphometric analysis.

NEXUS formatted alignment (including a list of excluded characters) of the mitochondrial DNA sequence data used in this study. Museum accession numbers and Genbank accession...

This file includes the complete results of the phylogenetic analysis including the character matrix, ACCTRAN and DELTRAN optimizations and the scripts used in each analysis.