This directory contains the FASTA file output of the genus assignment analysis for each orthogroup that was identified using OrthoMCL (1,502 orthogroups in total).

Data from the ancestral state estimation analysis to detect convergent evolution of host associations.

Contains files needed to replicate the ancestral state estimation analysis from the associated R script (R_code_for_analysis.R)

2016-08-25 Fast Walstrom Outlaw Supplemental File.docx

Excel file containing Appendices 1 (data summary by sample), Appendix 2 (RNA extraction results), and 3 (list of contigs that were identified as contaminants).

This R file contains the examples necessary to reproduce our analyses using the accompanying data set. This code has been written by Jamie Winternitz, who can be contacted at...

This directory contains the output of the ContamFinder pipeline that was run on each of the transcriptomes sequenced in this study.