This is the main working directory for the project and it contains clean data, all scripts needed to reproduce the analysis, results, figures, notes from the development...

Functions in R for de-multiplexing (assigning sample identify for each read using the sequence barcode at the beginning of the read) the raw sequencing data. The raw data itself...

This data table has the information of maximum biomass for corn (G1). Each column in the data file has been described in a separate Readme.txt file.

See ReadMe file for complete description of columns

Microbiome sample metadata. "SampleID" = unique identifier for a sequenced 16S rDNA amplicon pool corresponding to a single sample. "Name" = more descriptive unique sample name....

Non-default parameters used for bioinformatics tools in this study.

This data table has the information of maximum biomass for switchgrass (G5), miscanthus (G6), native grass mixture (G7), and restored prairie (G10). Each column in the data file...

This data file has the information of daily precipitation (mm) recorded at the LTER station, KBS Hickory Corners, Michigan. Each column in the data file has been described in a...

R code for paper analysis

This data table has the information of calculated WUE-maximum biomass (kg/ha/mm) for different crops. Each column in the data file has been described in a separate Readme.txt file

This data table has information of percent of days during growing period when we used SALUS model to estimate the evapotranspiration.Each column in the data file has been...

This file lists and describes all the variables used in the final analysis.

Background Switchgrass is a crop with many desirable traits for bioenergy production. Plant genomes have high DNA methylation levels throughout genes and transposable elements...

This data table has the information of harvest yield of corn (grain, corn stover and residual stover), switchgrass, miscanthus, grass mixture, hybrid poplar and restored prairie...

Excel Spreadsheet including all data in this manuscript. (XLSX 314 kb)

GO analysis of hypermethylated- and hypomethylated-DMRs. (XLSX 824Â kb)