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Are developers losing interest on my project? An initial study on unstar even...
GitHub is the most popular social coding platform and the world's largest collection of open source software. In this platform, users can star repositories to manifest their... -
Implementing novel, flexible, and powerful survey designs in R Shiny.
Survey research is ubiquitous in the social sciences as a cost-effective and time-efficient means of collecting data. However, the available software for implementing and... -
Computation of adherence to medication and visualization of medication histor...
Adherence to medications is an important indicator of the quality of medication management and impacts on health outcomes and cost-effectiveness of healthcare delivery.... -
OSS-DBS: Open-source simulation platform for deep brain stimulation with a co...
In this study, we propose a new open-source simulation platform that comprises computer-aided design and computer-aided engineering tools for highly automated evaluation of... -
bertha: Project Skeleton for Scientific Software
Science depends heavily on reliable and easy-to-use software packages, such as mathematical libraries or data analysis tools. Developing such packages requires a lot of effort,... -
cgmanalysis: An R package for descriptive analysis of continuous glucose moni...
Continuous glucose monitoring (CGM) is an essential part of diabetes care. Real-time CGM data are beneficial to patients for daily glucose management, and aggregate summary... -
Using the CustusX toolkit to create an image guided bronchoscopy application:...
Purpose The aim of this paper is to show how a specialized planning and guidance application called Fraxinus, can be built on top of the CustusX platform (www.custusx.org),... -
C3-PRO: Connecting ResearchKit to the Health System Using i2b2 and FHIR
A renewed interest by consumer information technology giants in the healthcare domain is focused on transforming smartphones into personal health data storage devices. With the... -
Open source software in quantum computing
Open source software is becoming crucial in the design and testing of quantum algorithms. Many of the tools are backed by major commercial vendors with the goal to make it... -
Orienteering Problem with Functional Profits for multi-source dynamic path co...
Orienteering problem (OP) is a routing problem, where the aim is to generate a path through set of nodes, which would maximize total score and would not exceed the budget. In... -
Open source software security vulnerability detection based on dynamic behavi...
Open source software has been widely used in various industries due to its openness and flexibility, but it also brings potential security problems. Therefore, security analysis... -
Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machi...
Background Microfluidic lab-on-chip technology combined with live-cell imaging has enabled the observation of single cells in their spatio-temporal context. The mother machine... -
The Open Source Seed Licence: A novel approach to safeguarding access to plan...
The laws to secure intellectual property rights on plant germplasm have been strongly developed in parallel to the ongoing seed market consolidation. Germplasm as a commons,... -
Singularity: Scientific containers for mobility of compute
Here we present Singularity, software developed to bring containers and reproducibility to scientific computing. Using Singularity containers, developers can work in... -
Ultra close-range digital photogrammetry in skeletal anthropology: A systemat...
Background: Ultra close-range digital photogrammetry (UCR-DP) is emerging as a robust technique for 3D model generation and represents a convenient and low-cost solution for... -
An image J plugin for the high throughput image analysis of in vitro scratch ...
AbstractIn vitro scratch wound healing assay, a simple and low-cost technique that works along with other image analysis tools, is one of the most widely used 2D methods to... -
IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecu...
: Ion conduction mechanisms of ion channels are a long-standing conundrum. Although the molecular dynamics (MD) method has been extensively used to simulate ion conduction... -
Ten quick tips for using a Raspberry Pi
Much of biology (and, indeed, all of science) is becoming increasingly computational. We tend to think of this in regards to algorithmic approaches and software tools, as well... -
BioPPSy: An Open-Source Platform for QSAR/QSPR Analysis
: The reliability of quantitative structure-property relationship (QSPR) and quantitative structure-activity relationship (QSAR) models is often difficult to assess due to the... -
dLagM: An R package for distributed lag models and ARDL bounds testing
: In this article, we introduce the R package dLagM for the implementation of distributed lag models and autoregressive distributed lag (ARDL) bounds testing to explore the...