29 items found

Tags: Molecular Biology Phylogenomics

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  • dataset

    S15D-Telluraves-Overlap-Split-Concept-Resolution-mir

    S15D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Telluraves alignment (higher-level subset), under split-concept resolution. Total = 81 MIR....
  • dataset

    J_Phylogenetic_trees

    This file contains all the phylogenetic trees associated with this study.
  • dataset

    dedup_wf_001--ec9c8b155b3902f62cce295db096b319

    This ZIP file includes the genetic and morphological matrices that were used to perform the BPP and iBPP analyses.
  • dataset

    GHI_Data_matrices

    This file contains data matrices used in this study.
  • dataset

    Replace_StLaurent_et_al_RAW_sequence_data.tar.gz

    This file contains all Anchored Hybrid Enrichment (AHE)-derived raw sequencing reads for the article "Museum specimens provide phylogenomic data to resolve relationships of...
  • dataset

    OPH04

    OPH04 trimmed fastq.gz read files - 192 files, 96 samples
  • dataset

    Supplementary Information

    Supplementary Information for: Early Succession on Slag Compared to Urban Soil: A Slower RecoveryS1 File. Supplemental information: methods and results. Detailed history of...
  • dataset

    dedup_wf_001--4aa1152a47af64e10339bb6b74b3a151

    Zip archive containing raw contig assemblies (fasta format) for all samples used in this study.
  • dataset

    dedup_wf_001--f25a526c13870b880a71a85707363c77

    S2B File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Psittaciformes alignment, with coverage globally applied. Total = 108 MIR. File format: .csv.
  • dataset

    PacificOcean_140m_contigs.fa

    Complete assembly of the Tara Oceans metagenome (SRA accession: ERR599156). Metagenome was derived from Pacific Ocean sampled at 140m depth. See the associated publication for...
  • dataset

    MOESM9 of Charting the diversity of uncultured viruses of Archaea and Bacteria

    Additional file 9: File S1. Link to download the multifasta file containing the 195,698 viral genomic sequences from Vir_DB_Nuc analyzed in this study.
  • dataset

    S14D-Telluraves-Overlap-Whole-Concept-Resolution-mir

    S14D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Telluraves alignment (higher-level subset), under whole-concept resolution. Total = 81 MIR....
  • dataset

    OPH03

    OPH03 trimmed fastq.gz read files - 192 files, 96 samples
  • dataset

    Additional file 6: of Ginkgo bilobaâ s footprint of dynamic Pleistocene histo...

    Partition finder file, partitioning scheme and alignment for Ginkgo dataset as text file. (TXT 9655Â kb)
  • dataset

    PacificOcean_115m_contigs.fasta

    Complete assembly of the Tara Oceans metagenome (SRA accession: ERR594304). Metagenome was derived from Pacific Ocean sampled at 115m depth. See the associated publication for...
  • dataset

    OPH02

    OPH02 trimmed fastq.gz read files - 190 files, 95 samples
  • publication

    "A scalability study of phylogenetic network inference methods using empirica...

    Background Branching events in phylogenetic trees reflect bifurcating and/or multifurcating speciation and splitting events. In the presence of gene flow, a phylogeny cannot be...
  • dataset

    S13D-Passeri-Overlap-mir

    S13D File. Set of Maximally Informative Relations (MIR) inferred for the 2015.Passeri/2014.Passeriformes_Clade2 alignment, with coverage locally relaxed. Total = 140 MIR. File...
  • dataset

    S16D-Neornithes-Higher-Level-Overlap-mir

    S16D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Neornithes alignment, under whole-concept resolution, ranging from the root to the ordinal...
  • dataset

    S10D-Neornithes-Excepting-Telluraves-mir

    S10D File. Set of Maximally Informative Relations (MIR) inferred for the 2015./2014.Neornithes alignment (excepting 2015./2014.Telluraves), with coverage locally relaxed. Total...