93 items found

Tags: Landscape Genetics

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  • dataset

    Structure infile

    File contains input data file for Structure analysis. In first column is sample ID (nz=New Zealand, uk=United Kingdom, mc=Macreas flat, t=Twizel, ml=Molesworth, p=Palemrston, A=...
  • dataset

    Pairwise FST Table

    Pairwise population FST calculated by hierfstat. FST values are represented between each cluster (k=3), globally between populations, and between populations within each genetic...
  • dataset

    dedup_wf_001--6789b46858f3248ebb1ce36274166f60

    Script for running MRDM analyses for Medley et al. 2014.
  • dataset

    SamplingLocations_BothTimePeriods_ArcGISshapefile

    This is an ArcGIS shapefile containing polygons describing the sampling locations (populations of desert bighorn sheep) at both time periods. Two letter codes and population...
  • dataset

    isolation_by_distance

    Genetic distance (FST/(1- FST)) versus geographic distance is plotted for all pairwise comparisons among populations of G. f. fuscipes in northern (A) or southern (B) Uganda. In...
  • dataset

    structure_input

    This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite markers and 3 coding genes for 409 Radix snails from the core and extended...
  • dataset

    Migrate - SanPedro

    MIGRATE-n file containing the microsatellite data (14 markers) of the freshwater fish Galaxias platei in the San Pedro system in Nothern Patagonia. The parmfile for this run is...
  • dataset

    Gopher CO1 fasta file

    Gopher CO1 fasta file
  • dataset

    dedup_wf_001--417836f8e8784abda81d93cfec196e64

    Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data...
  • dataset

    Pairwise comparisons

    Pairwise comparisons of geographic (distance.km) and environmental (distance.e) distances between populations and genetic differentiation (FST) between populations. Genetic...
  • dataset

    params_ex

    Example of a params file used in pyramid for this study.
  • dataset

    CCA Script

    R script for performing canonical correspondence analysis for environmental data and Structure cluster membership
  • dataset

    dedup_wf_001--6a25250a597a6d289bee7904e2f7d7d3

    Coding region sequence for at4g25470 (CBF3) for all accessions used in this study.
  • dataset

    dedup_wf_001--838a50ad05bd0640ee6938fbf5024d80

    STRUCTURE input file for modern populations
  • dataset

    Abal_sample_data

    Tree by tree environmental data for Abies alba samples.
  • dataset

    Genotype data

    The TalentiEtAl_2017.ped file contains the unphased genotype data for all the 929 animals described in the paper: "Genomic analysis suggests KITLG is responsible for a roan...
  • dataset

    ndvi_1000

    NDVI 1000m
  • dataset

    Asymmetric Eigenvector Maps 2009

    The Asymmetric Eigenvector Maps for the gathering events in 2009. Rows correspond to the gathering events and columns to the first 500 Eigenvectors.
  • dataset

    gsd_migrate_12l

    gsd_migrate_12l
  • dataset

    LFMM files

    Input used in LFMM analyses including genetic (sitta.lfmm) and environmental (sitta.lfmm.env) data for each individual.