-
MEC-15-690-Dryad
This zip file extracts data used in Roy et al MEC-15-0690. The ".txt" file is the raw microsatellite scores in number of repeats formatted for the Convert.exe program. The... -
r37980778c78--186a5c7ebf3d9852384ba7c3c3caf2ed
Contains the Maple file (.mw) that calculates critical release thresholds using plausible approximations as described in Supplementary Text S3. -
STRUCTURE_v.2.3.4_input_file
This is the input file needed to run STRUCTURE v2.3.4 (Pritchard et al 2000; Falush et al 2003; Falush et al 2007), which we used to identify pure species and hybrids. STRUCTURE... -
X_mac_mRNA
X_mac_mRNA.fasta: Fasta file including the Xyphophorus maculatus mRNA sequences retrieved from Ensembl (23,236 sequences) used for BLASTN analyses. -
r37980778c78--7d7cb0ba1d131521c8f29dc01dc8ecdd
Contains the Maple code that calculates critical release thresholds using plausible approximations as described in Supplementary Text S3, in this version in a plain text (.txt). -
Field Data
Life history data for seed from five source populations (AFT - Afton State Park, Afton, MN; GCD - Grey Cloud Dunes Scientific and Natural Area, Cottage Grove, MN; CRA - Conard... -
rawvar_rmdup.ind7
Raw SNP data from Index 7 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK. -
rawvar_rmdup.ind20
Raw SNP data from Index 20 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK. -
dedup_wf_001--0967d1f1880df3f18f9a0169d10ed832
Compressed vcf file containing snps identified in all four transcriptomes against Trinity derived pooled assembly as reference. PF01 = CN7_1, PF02 = ZAG2_1, PF03 = ZAG5_1, PF04... -
dedup_wf_001--ddd4483cbcb597f8c750e526cfbef9a2
Raw SNP data from Index 18 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK. -
rawvar_rmdup.ind6
Raw SNP data from Index 6 for Ishikawaella U.S. 2011 from Illumina HiSeq generated using GATK.