80 items found

Types: software Tags: Immunology Plant Biology

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  • software

    Data and code to reproduce all analyses described in the paper "NicheNet: Mod...

    Here you can find a directory containing the data and code to reproduce all analyses described in the NicheNet paper (https://www.nature.com/articles/s41592-019-0667-5). ...
  • software

    Software used in 'Discontinuous Galerkin discretization for two-equation turb...

    This record collates DOIs for the software components used in 'Discontinuous Galerkin discretization for two-equation turbulence closure model'. The Firedrake components and...
  • software

    r37980778c78--798dd20d6c1419e77c22118f9f64660e

    R package associated with the following research paper : Fadili, M., Renaud, JP., Bock, J. et al. Annals of Forest Science (2019) 76: 30....
  • software

    r37980778c78--a5d1d340d85a1df29a0e1762013be3bc

    list of implemented technics original regression (MLMR) original classification (MLMC) nearest neighbor MLM (NN_MLM) opposite neighborhood MLM (ON_MLM) fuzzy C-means MLM...
  • software

    Omics Visualizer

    Cytoscape 3 app to import & visualize several data for the same node in a biological network.
  • software

    Adversarial Algorithms In Tensorflow

    Bug fix for DeepFool binary classifier case Add batch mode for DeepFool where the algorithm runs until the max epoch is reached. Add batch mode example
  • software

    labordynamicsinstitute/ldi-replication-dataprep: LDI Replication Lab Data Pre...

    These programs prepare and clean the raw data from the LDI Replication Lab. The output is manually curated on Zenodo, and used for downstream analysis.
  • software

    ReproZip: 1.0.5

    (reprounzip-vagrant didn't change) Bugfixes: Correctly download parameters from server More reliable way of determining X server IP without using /bin/ip Downloads:...
  • software

    bigSCale2

    Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data.
  • software

    r37980778c78--e8bc2a667081fcc4737162dad5500745

    reprounzip-vistrails didn't change) Bugfixes: Fixes error using Docker with--enable-x11 on Python 3 Enhancements: docker run gets a --detach command, to keep the...
  • software

    r37980778c78--1e88594c4086dd7e54ff3079b42e6cc2

    Behavior changes: reprounzip will no longer run on Python 2.6 Bugfixes: Fixes file download not using cache if URL is HTTPS Fixes unpacking with directory or chroot for...
  • software

    r37980778c78--a2fc1054489a79693e137eda44d9e12d

    Natural products (NPs), often also referred to as secondary metabolites, are small molecules synthesized by living organisms. Natural products are of interest due to their...
  • software

    CLARIAH/grlc 1.1

    grlc is a lightweight server that takes SPARQL queries curated in GitHub repositories, and translates them to Linked Data Web APIs. This enables universal access to Linked Data....
  • software

    r37980778c78--f5062bf6ac5079c39371b42fa4dcaf47

    GenerateAG.m is a short MATLAB script that calculates a restricted generalized inverse AG using input data from an atmospheric photochemistry mechanism. The inverse problem...
  • software

    r37980778c78--806dd10f4ed0cd48a923c40b41ba37b8

    Cobb-Dug L-opt 2.mw  --- нахождение оптимального плана, если точки плана внутренние optim_design.mw --- проверка оптимальности плана, если точки плана --- углы единичного...
  • software

    nfrerebeau/khroma v1.1.0

    ADD: FAO Soil Reference Groups colour scheme ADD: scale_*_bright() method for Paul Tol's bright colour scheme ADD: scale_*_vibrant() method for Paul Tol's vibrant...
  • software

    Arcticcritter

    Arcticcritter is a prototype webbased data exploration and retrieval tool build to showcase visualization techniques and to enable user-driver demand analysis for...
  • software

    Inovesa/Inovesa: 2016-11

    This feature level is described in the first paper (see https://arxiv.org/abs/1611.05293). It supports everything needed to do simulations of longitudinal phase space. Change...
  • software

    r37980778c78--905748fea9521b1bf8cb506b658c4d2b

    This file contains all the scripts and formated data that were used for the ms entitled "The quiescent X, the replicative Y and the Autosomes" by Achaz et al. The biorxiv...
  • software

    ReproZip: 1.0.9

    (reprounzip-vistrails didn't change) Bugfixes: Fix CentOS Docker image versions Remove Fedora Docker images, they don't have tar Do include .pyc files in packages, so...