Data and code to reproduce all analyses described in the paper "NicheNet: Modeling intercellular communication by linking ligands to target genes"

Here you can find a directory containing the data and code to reproduce all analyses described in the NicheNet paper (https://www.nature.com/articles/s41592-019-0667-5).  The subdirectories contain following information: networks_final: data and scripts to create the integrated ligand-receptor, signaling and gene regulatory networks evaluation_final: data and scripts to validate the NicheNet model. Includes scripts for optimization and characterization of data sources as well. application_final: data and scripts used to apply NicheNet to single-cell data from Puram et al. and Medaglia et al. data_nichenet_final: final networks, models and expression datasets

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PID https://www.doi.org/10.5281/zenodo.3462199
PID https://www.doi.org/10.5281/zenodo.3462198
URL http://dx.doi.org/10.5281/zenodo.3462199
URL https://zenodo.org/record/3462199
URL http://dx.doi.org/10.5281/zenodo.3462198
URL https://figshare.com/articles/Data_and_code_to_reproduce_all_analyses_described_in_the_paper_NicheNet_Modeling_intercellular_communication_by_linking_ligands_to_target_genes_/11447556
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Access Right Open Source
Attribution

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Author Browaeys, Robin, 0000-0003-2934-5195
Author Saelens, Wouter, 0000-0002-7114-6248
Author Saeys, Yvan, 0000-0002-0415-1506
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Collected From Zenodo; figshare; Datacite
Hosted By Zenodo; figshare
Publication Date 2019-09-26
Publisher Figshare
Additional Info
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Language UNKNOWN
Resource Type Software
system:type software
Management Info
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Source https://science-innovation-policy.openaire.eu/search/software?softwareId=dedup_wf_001::ff0944c1c751d1b7d040c16b353c5633
Author jsonws_user
Last Updated 17 December 2020, 23:31 (CET)
Created 17 December 2020, 23:31 (CET)