216 items found

Tags: Genomics

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  • dataset

    Additional file 6: of Bioinformatics Resource Manager: a systems biology web ...

    Zebrafish miRNA list. List of differentially expressed miRNA in zebrafish after treatment with BAP. (TXT 1305 kb)
  • dataset

    Fast and accurate large multiple sequence alignments with a root-to-leaf regr...

    This dataset contains a GitHub repository containing all the data, analysis, Nextflow workflows and Jupyter notebooks to replicate the manuscript titled "Fast and...
  • dataset

    Supplementary Sample Information

    Supplementary Sample Information as well as SRA accession numbers.
  • dataset

    Additional file 2: of A standardized framework for representation of ancestry...

    Table S1. GWAS Catalog countries of recruitment for which no ancestry information was provided. (XLSX 77 kb)
  • dataset

    Flaxman_Data

    .zip archive of raw data used in publication figures
  • dataset

    dedup_wf_001--9f772dfe77735acace90d9a804b688d4

    Table S3. Specific examples to illustrate the application of the framework to the GWAS Catalog. (XLSX 70 kb)
  • dataset

    Mitochondrial genome annotation Amphiprion frenatus

    Mitochondrial genome annotation for Amphiprion frenatus, in csv format. MitoAnnotator and MitoFish were used to obtain the mitochondrial genome annotation. For more information,...
  • dataset

    Additional file 5: of A standardized framework for representation of ancestry...

    Table S4. HapMap Project and 1000 Genomes Project populations with assigned ancestry category. (XLSX 27 kb)
  • dataset

    R_scripts

    R scripts used for multivariate genomic analysis, mtDNA analysis, morphology, dadi data preparation, dadi model to demographic value conversion, and all figures.
  • dataset

    dedup_wf_001--53327e9d9369d004524b8a3fac888877

    Accessions of Cucumis melo genotyped in this study. Abbreviation in the origin field refer to different Provinces within the Apulia Region (BA: Bari; BAT: Barletta-Andria-Trani;...
  • dataset

    Genome-wide recruitment profiling of transcription factor Crz1 in response to...

    Exposure of the budding Saccharomyces cerevisiae to an alkaline environment produces a robust transcriptional response involving hundreds of genes. Part of this response is...
  • dataset

    TableS2

    Association mapping results of the top 100 SNPs for each trait including P-values, negative log transformed P-values, FDR corrections, physical positions and ranking information.
  • dataset

    Processed_Data

    Fig.1 The He number density for equilibrium He bubble at 300K. The green and red dots correspond to the unsaturated and saturated state, respectively. Fig.2 The pressure of...
  • dataset

    Isolated Iliac Cryptococcosis in an Immunocompetent Patient

    Cryptococcal osteomyelitis is an infrequent infection which is usually associated with disseminated cryptococcosis or underlying immunocompromised conditions. Here we described...
  • dataset

    Additional file 2: of Pairing pedagogical and genomic advances to prepare adv...

    Table S2. Shows the response options for assessment of satisfaction with the course. (XLSX 8 kb)
  • dataset

    Model Selection

    (A) Blue bars: the percentage of periodic solutions in 40,000 simulations for some level of total control protein in the range 0–2500 copies/nucleus. Red bars: the percentage...
  • dataset

    r37980778c78--c359922dd1024d0d6b1ab33945587e37

    Filtered VCF containing approximately 13 million SNPs. This file contains data for 20 individuals (c = coastal, u = upland). See extended data table 1 for sample information.
  • dataset

    dadi

    demographic analysis (dadi) python scripts and dadi-formatted input file.
  • dataset

    Expression Data

    These files contain expression data, both in its pre-processed form and the actual data we used to generate the results. We've also included the scripts used to process the...
  • dataset

    Regional heterogeneity in response of airway epithelial cells to cigarette smoke

    Abstract Background Cigarette smoke (CS) exposure causes an abnormal inflammatory response, which can result in chronic obstructive pulmonary disease (COPD). Previous studies...