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PathoPhenoDB: a database of pathogen-phenotype associations
PathoPhenoDB is a database containing pathogen-to-phenotype associations mined from the scientific literature. PathoPhenoDB relies on manual curation of pathogen-disease... -
A family of auxin conjugate hydrolases from Solanum lycopersicum and analysis...
Abstract Background Auxin conjugates are hydrolyzed to release free auxin to ensure defined cellular auxin levels or gradients within tissues for proper development or response... -
Database of mechanism of action paths for selected drug-disease indications
Mechanistic paths that lead from drug to disease in a heterogeneous network. Version 1.1.0 includes a new tab metapaths_biolink where the majority of node and edge types have... -
Landscape of gene fusions in epithelial cancers: seq and ye shall find
Abstract Enabled by high-throughput sequencing approaches, epithelial cancers across a range of tissue types are seen to harbor gene fusions as integral to their landscape of... -
Brainport, Highway pilot, car in manual mode, camera detection
Scenario description: The detection car drives around the track in manual mode, with Camera detection ON. Session description: 25 laps with VW Tiguan on Automotive Campus... -
pTuneos: prioritizing tumor neoantigens from next-generation sequencing data
Abstract Background Cancer neoantigens are expressed only in cancer cells and presented on the tumor cell surface in complex with major histocompatibility complex (MHC) class I... -
Main SNP file STRUCTURE format
Dataset of 3764 SNP structure file. Population information included in second column. -
dedup_wf_001--0d70ba401028555fe4c68840718be5fd
Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s... -
Additional file 19: Figure S18. of Defining the transcriptomic landscape of t...
Top significant GO terms from the Cellular component category in non-neurons. To identify and visualize some of the top significant GO terms, a bar graph was plotted with the... -
PBMDA was applied to Esophageal Neoplasms to predict the potential disease-re...
PBMDA was applied to Esophageal Neoplasms to predict the potential disease-related miRNAs, and 44 of top-50 predicted miRNAs have been confirmed according to recent experimental... -
An integrated framework for the identification of potential miRNA-disease ass...
MicroRNAs (miRNAs) play an important role in prevention, diagnosis and treatment of human complex diseases. Predicting potential miRNA-disease associations could provide... -
Study dataset.
Compliance with NPG checklist items: data dictionary available in project space. In version 2, 7 errors from the previous version at database lock (publication date for PMID... -
Kras_10-5_132136_filtered.csv
A gzipped csv documenting the tag, read sequence, and associated qualities of all reads matching the majority read length (documented in read lengths csv) of PCR-based 10^-5... -
Output of genus assignment analysis
This directory contains the FASTA file output of the genus assignment analysis for each orthogroup that was identified using OrthoMCL (1,502 orthogroups in total). -
T1D map
For each marker, this simple text file gives the name, the chromosome, and the chromosome-specific location. The order of the markers in this file, corresponds to the order of... -
Ecotoxicological QSAR modelling of organic chemicals against <i>Pseudokirchne...
The present study provides robust consensus quantitative structure-activity relationship (QSAR) models developed from 334 organic chemicals covering a wide chemical domain for... -
mtDNA alignment
Mitochondrial (COI) alignment of Parasemia plantains used in the paper "Temporal relationship between genetic and warning signal variation in the aposematic wood tiger moth... -
STRUCTURE Data File for western Caribbean A. spinosa populations
This is the project file for the STRUCTURE analyses covering the western Caribbean A. spinosa populations. The .spj file containing the run parameters are contained in a...
