PathoPhenoDB: a database of pathogen-phenotype associations

PathoPhenoDB is a database containing pathogen-to-phenotype associations mined from the scientific literature. PathoPhenoDB relies on manual curation of pathogen-disease relations, and on ontology-based text mining to associate phenotypes with infectious disease. Using Semantic Web technologies, PathoPhenoDB also links to knowledge about drug resistance mechanisms and drugs used in the treatment of infectious diseases. The information in PathoPhenoDB can provide background knowledge about known pathogens, diseases, and phenotypes, and the drugs to which they respond; it therefore provides a tool for research on infectious diseases and drug mechanisms. PathoPhenoDB is accessible at http://patho.phenomebrowser.net/, and the data is freely available through a public SPARQL endpoint.

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Identity

Description: The Identity category includes attributes that support the identification of the resource.

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PID https://www.doi.org/10.5281/zenodo.2592941
PID https://www.doi.org/10.5281/zenodo.1970276
PID https://www.doi.org/10.5281/zenodo.2592933
PID https://www.doi.org/10.5281/zenodo.2582409
PID https://www.doi.org/10.5281/zenodo.1970275
URL http://dx.doi.org/10.5281/zenodo.2592941
URL https://dx.doi.org/10.5281/zenodo.2592933
URL https://figshare.com/articles/PathoPhenoDB_a_database_of_pathogen-phenotype_associations/7850696
URL http://dx.doi.org/10.5281/zenodo.2592933
URL https://figshare.com/articles/PathoPhenoDB_a_database_of_pathogen-phenotype_associations/11647398
URL http://dx.doi.org/10.5281/zenodo.1970275
URL http://dx.doi.org/10.5281/zenodo.1970276
URL https://zenodo.org/record/2582409
URL https://zenodo.org/record/2592941
URL https://figshare.com/articles/PathoPhenoDB_a_database_of_pathogen-phenotype_associations/11671725
URL https://zenodo.org/record/2592933
URL http://dx.doi.org/10.5281/zenodo.2582409
URL https://zenodo.org/record/1970276
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Access Right Open Access
Attribution

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Author Kafkas, Şenay
Author Abdelhakim, Marwa
Author Hashish, Yasmeen
Author Kulmanov, Maxat
Author Abdellatif, Marwa
Author Schofield, Paul
Author Hoehndorf, Robert, 0000-0001-8149-5890
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Collected From Zenodo; Datacite; figshare
Hosted By Zenodo; figshare
Publication Date 2018-11-30
Publisher Zenodo
Additional Info
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Language English
Resource Type Dataset
system:type dataset
Management Info
Field Value
Source https://science-innovation-policy.openaire.eu/search/dataset?datasetId=dedup_wf_001::e321ed08cecafd32a6c6186db751c068
Author jsonws_user
Version 1.0.0
Last Updated 14 January 2021, 14:46 (CET)
Created 14 January 2021, 14:46 (CET)