*Transect refers to the straight distance along which samples were collected at each site. The three sites for P. jubatus are contained within the Munchique National Park (Fig. 2).

multidimensional folded SFS created by easySFS and used for demographic analysis in fsc26

Population map used to create vcf file to crease mSFS in easySFS.

Excel file with three data sheets and a sheet explaining all column headings. 'metaanalysis performance data' gives extracted values for each performance parameter in each...

Stacks summary ouput

Raw data

Final filtered vcf file used for the main analyses.

Population map used for STACKS and main analyses

Summary stats output from Stacks

Values in brackets indicate P values corrected by the Benjamini-Hochberg method [80].

Background Signals are essential for communication and play a fundamental role in the evolution and diversification of species. Olfactory, visual and acoustic species-specific...

+Significantly higher haplogroup frequencies (T-test, Sig = 0.05) from the overall haplogroup mean.−Significantly lower haplogroup frequencies (T-test, Sig = 0.05) from the...

Example script from parameter optimization in the denovomap pipeline

Example command to run easySFS

The genetic impact associated to the Neolithic spread in Europe has been widely debated over the last 20 years. Within this context, ancient DNA studies have provided a more...

Down projection results from easySFS