10 items found

Tags: FFPE samples

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  • dataset

    r37980778c78--80abccb07af107084a85973fcbd436cb

    Overlap between results using 50th percentile shift normalization and global normalization is highlighted in green. On the left—results from FF samples, on the right—results...
  • dataset

    Selection of annotated tumor-specific variants found in common between FF and...

    Chr: chromosome number. Position: position of the variant on the chromosome. Ns: number of samples in which the variant was found. COSMIC ID: COSMIC database identification...
  • dataset

    Insertion-deletion events (INDELs) analysis between FF and FFPE sample pairs.

    NFF: Number of INDELs in FF samples, NFFPE: number of INDELs in FFPE samples, NPos: number of common positions between FF and FFPE samples, Nco: number of concordant positions,...
  • dataset

    r37980778c78--fcb2ad93f3b256a3b3a4870c6a3e595c

    The overlap between FF vs FFPE material is highlighted in green. On the left—results using 50th percentile shift normalization for data analysis. On the right—results using...
  • dataset

    Performance comparison of three DNA extraction kits on human whole-exome data...

    Next-generation sequencing (NGS) studies are becoming routinely used for the detection of novel and clinically actionable DNA variants at a pangenomic scale. Such analyses are...
  • dataset

    r37980778c78--d72424b270871cfa257afb4373f95979

    FFPE: formalin-fixed paraffin-embedded samples.
  • dataset

    r37980778c78--92a483540dd9e9db967c8f8f78d67a39

    Spearman correlation values between miRNA expression profiles of FF and FFPE paired samples.
  • dataset

    Coverage, variant calling and technical quality indicators for the three FFPE...

    Values are given for quantitative indicators. The number of stars between brackets (one, two or three) indicate the relative ranking of a given kit for the indicator and for the...
  • dataset

    r37980778c78--41a51a61228234a8e10fda561c0e6199

    NFF: Number of SNV in FF samples, NFFPE: number of SNV in FFPE samples, NPos: number of common positions between FF and FFPE samples, Nco: number of concordant positions, Ndi:...
  • dataset

    Comparison of Accuracy of Whole-Exome Sequencing with Formalin-Fixed Paraffin...

    Formalin fixing with paraffin embedding (FFPE) has been a standard sample preparation method for decades, and archival FFPE samples are still very useful resources. Nonetheless,...