19 items found

Tags: Carex

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  • dataset

    nova_empirical_data

    Empirical SNP dataset for Carex nova. These data were used to create summary statistics in arlsumstat for comparison with modeled data in the ABC procedure. They also informed...
  • dataset

    "Micromorphological data"

    Dataset of the 23 micromorphological characters from 66 specimens belonging to Carex sect. Heleoglochin and relatives
  • dataset

    settings_chalciolepis_splatche

    This is an example of a settings file for a single Splatche run. The Splatche documentation describes all of the options within the file in detail. The file can be viewed and...
  • dataset

    Supplementary Data 1

    Supplementary Data 1. Raw fossil data. Repository and Specimen indicate the collection in which specimen is held and its specimen number. Family, Subfamily, Tribe, Genus, and...
  • dataset

    chal_empirical_data

    Empirical SNP dataset for Carex chalciolepis. These data were used to create summary statistics in arlsumstat for comparison with modeled data in the ABC procedure. They also...
  • dataset

    Individual flow cytometry data points, Carex subgenus Vignea

    Flow cytometry data were analyzed in FlowJo software to estimate genome sizes, following protocols described in the publication associated with this dataset. This Excel...
  • dataset

    chalciolepis_ABCsampler_input_file

    This is an example of an input file used by the ABCsampler program. It defines the values that need to be updated at every new iteration (in capital letters - taken from the...
  • dataset

    Parameters for Pyrad

    This file contains the Pyrad parameters file that was used to create the SNP dataset that was used (after modification) in ML and SVDquartets analyses.
  • dataset

    Supplemental Data 5

    Reference tree. Topology revealed by the all-nrDNA matrix of concatenated sequences of ETS, ITS and matK. Branches with support below 50% bootstrap are collapsed.
  • dataset

    All scripts and data files

    All scripts and data files
  • dataset

    create_mask

    This is an R script that creates a text file describing the pattern of missing data in an empirical dataset (see example mask file 'chal_missing_example' created from...
  • dataset

    Supplemental Appendix 1

    Preliminary assingment to sections according previously published data (see main text for details).
  • dataset

    Supplemental Data 2

    List of materials included in each of the three aporrhaid species treated in the text, organized by locality (Fig. 1) and indicating ammonoid zones. Additional materials are...
  • dataset

    chalciolepis_empirical_summary_stats

    This is an example of the empirical summary statistics that must be included in the simulation folder. This file was created using arlsumstat program and the empirical dataset...
  • dataset

    Niu ,He& Lechowiczl_Data_JAE

    Collected in the field; Site abbreviation: AZ=AaZi, WLK=WaLaKa,HY=HongYuan,QH=QingHai, NQ=NaQu
  • dataset

    dedup_wf_001--556b48555cbbba21a7f210b43251bade

    This file contains the SNP data used for the ML analysis. A key to species codes is given in a separate file.
  • dataset

    Supplemental Data 6

    Query tree. Topology revealed by the all-sequences matrix constrained by the reference tree, using concatenated sequences of ETS, ITS and matK. Branches with support below 75%...
  • dataset

    "RAxML_ETS.2014.08.21.raxd"

    Phylogenetic tree obtained after conducted the RAxML analysis of the ETS dataset
  • dataset

    germination_data

    Per run germination data for a bluebunch wheatgrass genecology study conducted in 2007-2008. UID = for each germination run. SITE = garden site: CF = Central Ferry, WA; LP =...