Table S2. The primer sequences used in this study. (XLS 27Â kb)

Gene expression analysis of transgenic mouse models. Using previously published gene expression data from breast tumors of transgenic mouse models [17], we found genes with...

Code. Normalization and PAM50 scripts for both platforms. Scripts used to perform the PAM50 assay in RNA-Seq and NanoString nCounter® platforms, along with additional...

Additional file 5: Table S5. Results table of multiple investigated markers. Table summarising all results from markers that were investigated in two or more independent study...

Additional file 1: Table S1. Lines of treatment given to the patients, who were enroled into the trial (# NCT01623349) and whose expression profiles at diagnosis were analyzed...

Neoadjuvant chemotherapy, that is, the administration of chemotherapy before surgery, has been commonly used for locally advanced breast cancer to improve the surgical outcomes...

Additional file 6: Table S6. Panther analysis of genes overexpressed in ovarian non-carriers. Ovarian carriers versus ovarian non-carriers.

is a table listing differentially expressed TFs. (XLSX 64 kb)

SPSS data file. (SAV 83Â kb)

Fusion read frequency for 79 breast cancer specific fusion-protein transcripts relative to total reads. Expression for fusion transcripts, as well as, those associated wild-type...

QC – NanoString. NanoString nCounter data Quality Control. NanoStringQCPro reports in .html files. Technical, control and count-based metrics are reported. Additionally, a table...

Experimentally validated miRNA sponge interactions and miRNA-target interactions in the modules identified by miRSM. (XLSX 11 kb)

Additional file 8: Table S8. Genes used for the analysis of the global immune activity of tumors.

Search terms. (XLSX 10 kb)

Male questionnaire dataset (XLSX 72 kb)

Introduction: Breast cancer is heterogeneous with distinct clinical outcomes. Diverse types of markers are available on the market for breast cancer prognosis, diagnosis, and...

Sensitivity analysis of the model performance in population with different sample sizes. We used different populations with different sample size to assess the performance and...

Additional file 2: Table S2. Genomic coordinates for all GR promoter methylation primers and probes.

Tamoxifen treatment in breast cancer patients is associated with increased risk of endometrial malignancies. Significantly, higher AGR2 expression was found in endometrial...

Mouse mammary tumours. Synaptophysin and chromogranin expression (XLSX 10 kb)