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Additional file 2: of Distinguishing potential bacteria-tumor associations fr...
This file is a tab-delimited text file of all TCGA read pairs and their corresponding metadata and bacterial taxonomic assignments. Comments are denoted by a #. Abbreviations... -
dedup_wf_001--acc7991e2e53b79a930f37d764f729d2
The demultiplexing file. Includes the sample name, population, sex, the barcodes used, sequencing length and data generator. -
Additional file 3: of Identifying and mitigating batch effects in whole genom...
Sample level summary statistics and annotations calculated by genotypeeval. (CSV 102Â kb) -
Risk-conscious correction of batch effects: maximising information extraction...
Background Batch effects are a persistent and pervasive form of measurement noise which undermine the scientific utility of high-throughput genomic datasets. At their most... -
Combining location-and-scale batch effect adjustment with data cleaning by la...
Background In the context of high-throughput molecular data analysis it is common that the observations included in a dataset form distinct groups; for example, measured at... -
Alternative empirical Bayes models for adjusting for batch effects in genomic...
Background Combining genomic data sets from multiple studies is advantageous to increase statistical power in studies where logistical considerations restrict sample size or... -
Additional file 3 of Alternative empirical Bayes models for adjusting for bat...
Comparison of P-values for applying robust and non-robust F tests on the four experimental datasets. (XLSX 12 kb) -
False SNPs caused by batch effect
This file is a vcf file containing the SNP calls at the eight SNPs identified as outliers. Seven of these SNPs were false variants caused by differences in read length.