8 items found

Tags: Batch effects

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  • dataset

    Additional file 2: of Distinguishing potential bacteria-tumor associations fr...

    This file is a tab-delimited text file of all TCGA read pairs and their corresponding metadata and bacterial taxonomic assignments. Comments are denoted by a #. Abbreviations...
  • dataset

    dedup_wf_001--acc7991e2e53b79a930f37d764f729d2

    The demultiplexing file. Includes the sample name, population, sex, the barcodes used, sequencing length and data generator.
  • dataset

    Additional file 3: of Identifying and mitigating batch effects in whole genom...

    Sample level summary statistics and annotations calculated by genotypeeval. (CSV 102Â kb)
  • publication

    Risk-conscious correction of batch effects: maximising information extraction...

    Background Batch effects are a persistent and pervasive form of measurement noise which undermine the scientific utility of high-throughput genomic datasets. At their most...
  • publication

    Combining location-and-scale batch effect adjustment with data cleaning by la...

    Background In the context of high-throughput molecular data analysis it is common that the observations included in a dataset form distinct groups; for example, measured at...
  • publication

    Alternative empirical Bayes models for adjusting for batch effects in genomic...

    Background Combining genomic data sets from multiple studies is advantageous to increase statistical power in studies where logistical considerations restrict sample size or...
  • dataset

    Additional file 3 of Alternative empirical Bayes models for adjusting for bat...

    Comparison of P-values for applying robust and non-robust F tests on the four experimental datasets. (XLSX 12 kb)
  • dataset

    False SNPs caused by batch effect

    This file is a vcf file containing the SNP calls at the eight SNPs identified as outliers. Seven of these SNPs were false variants caused by differences in read length.