Additional file 2: Table S2. Datasets used for analysis.

Additional file 12: Table S5. Grouping of breeds for calculation of genetic distances. (A) Regional monophyletic groups of breeds for the Neighbor-net graph in Additional file...

Additional file 1: Table S1. Sheep breeds analyzed in this study [16, 18, 20, 22, 31, 35, 47, 59, 76]. Colors indicate genetic clusters. Boxes indicate breeds combined in the...

Additional file 6: Figure S2. Neighbour-joining tree visualizing the allele-sharing distances of the Balkan sheep (see Fig. 1) or (see Additional file 1: Table S1) for the breed...

Additional file 7: Figure S3. FineStructure clustering of eastern and southeastern European sheep breeds. The color of each bin in the matrix indicates the number of “genomic...

Additional file 3: Table S3. A 358 SNPs informative for Asian Mouflon ancestry used in BSAA. Only SNPs were considered with > 40 out of 42, > 55 out of 57 and > 67 out...