27 items found

Tags: Approximate Bayesian Computation

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  • dataset

    Analysis of molecular variance for the partitioning of microsatellite diversity.

    Analysis of molecular variance for the partitioning of microsatellite diversity.
  • dataset

    Starting parameter values and ranges for a compartmental model of Hansen’s Di...

    Regional values are set based on the demographics of the area providing observed data for fitting. Fitted values (unfitted assumption in parentheses) are estimated using...
  • dataset

    Sampling locations.

    *Transect refers to the straight distance along which samples were collected at each site. The three sites for P. jubatus are contained within the Munchique National Park (Fig. 2).
  • dataset

    Data Table A

    Summary statistics derived for 30 empirical datasets used for estimating speciation mode.
  • dataset

    Hansen_et_al_2014_Salmo_trutta

    Genotype data for 44 microsatellite loci. The abbreviations correspond to those used in the publication. The data file is in Microsat Analyzer (MSA) Format (Dieringer, Daniel...
  • dataset

    r37980778c78--f5f5276b29cd5f843da942708a2ba900

    Incidence of Hansen’s Disease in the year 2050 is reported overall (i2050) and for multibacillary (iM2050) and paucibacillary (iP2050). The time to elimination (telim) was...
  • dataset

    Symphonia_globulifera_nSSR_data

    Symphonia_globulifera_nSSR_data
  • dataset

    Propithecus_perrieri_GPS_coordinates

    This file contains the geographic coordinates of the 42 Propithecus perrieri individuals genotyped and studied in the current paper as well as in Salmona et al., 2015. The...
  • dataset

    Propithecus_tattersalli_230ind_13loc

    This file contains the microsatellite genotype data used in the current paper as well as in Quéméré et al 2010, 2012. The file is in .gtx format and can be opened and analyzed...
  • dataset

    SeqSampleInformation

    Sample information, accessions, and raw sequences
  • dataset

    Datasets and analysis used in this study

    SNP and microsatellite genotyping, STRUCTURE and DIYABC input files used in this study
  • dataset

    dedup_wf_001--f6d07110d4c333170f2d872ae30a9242

    ABC toolbox model files (ms was the coalescent simulatior, MarkSim was used to generate mutations, arlsumstat was the summary statistic calculator) See ABC toolbox manual for...
  • dataset

    dedup_wf_001--174cf07aa6005e5237adf91f633d5415

    Contains the scripts needed to perform the simulations with ABCtoolbox and fastsimcoal for the ABC analysis, and the reference tables for each simulated model. ReadMe files are...
  • dataset

    Supplemental File

    Unique inflammatory profile is associated with higher SARS-CoV-2 acute respiratory distress syndrome (ARDS) mortality. We prospectively enrolled a cohort of 41 patients with...
  • dataset

    Kerdelhue2014_Heredity_MicrosatData_Dryad

    Kerdelhue2014_Heredity_MicrosatData_Dryad
  • dataset

    ModelVariation2

    ABC toolbox model files (ms was the coalescent simulatior, MarkSim was used to generate mutations, arlsumstat was the summary statistic calculator) See ABC toolbox manual for...
  • dataset

    Polymorphism data

    Microsatellite and nucleotide sequence data sets, used in the polymorphism study and the ABC analysis. ReadMe files describing the data are included in the directories.
  • dataset

    Posterior distribution median and 95% prediction intervals determined by ABC ...

    The values fit were βM = 1.9, βP = 1.2, φM = 0.2, and φP = 0.2 for all but the North, where φ2 = 0.46. Version 4 consisted of fitting the regional best-fit model to each...
  • dataset

    A Beginners Guide to Approximate Bayesian Computation in Population Genetics

    Tutorial on approximate Bayesian computation. The objective of the tutorial is to provide an insight and an intuition on how ABC works and its potential pitfalls, to give the...
  • dataset

    r37980778c78--69cb6f7a1d2aca176a864882b9ec64d1

    Dalmatian sage (Salvia officinalis L., Lamiaceae) is a well-known aromatic and medicinal Mediterranean plant that is native in coastal regions of the western Balkan and southern...