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Analysis of molecular variance for the partitioning of microsatellite diversity.
Analysis of molecular variance for the partitioning of microsatellite diversity. -
Starting parameter values and ranges for a compartmental model of Hansen’s Di...
Regional values are set based on the demographics of the area providing observed data for fitting. Fitted values (unfitted assumption in parentheses) are estimated using... -
Sampling locations.
*Transect refers to the straight distance along which samples were collected at each site. The three sites for P. jubatus are contained within the Munchique National Park (Fig. 2). -
Data Table A
Summary statistics derived for 30 empirical datasets used for estimating speciation mode. -
Hansen_et_al_2014_Salmo_trutta
Genotype data for 44 microsatellite loci. The abbreviations correspond to those used in the publication. The data file is in Microsat Analyzer (MSA) Format (Dieringer, Daniel... -
r37980778c78--f5f5276b29cd5f843da942708a2ba900
Incidence of Hansen’s Disease in the year 2050 is reported overall (i2050) and for multibacillary (iM2050) and paucibacillary (iP2050). The time to elimination (telim) was... -
Propithecus_perrieri_GPS_coordinates
This file contains the geographic coordinates of the 42 Propithecus perrieri individuals genotyped and studied in the current paper as well as in Salmona et al., 2015. The... -
Propithecus_tattersalli_230ind_13loc
This file contains the microsatellite genotype data used in the current paper as well as in Quéméré et al 2010, 2012. The file is in .gtx format and can be opened and analyzed... -
Datasets and analysis used in this study
SNP and microsatellite genotyping, STRUCTURE and DIYABC input files used in this study -
dedup_wf_001--f6d07110d4c333170f2d872ae30a9242
ABC toolbox model files (ms was the coalescent simulatior, MarkSim was used to generate mutations, arlsumstat was the summary statistic calculator) See ABC toolbox manual for... -
dedup_wf_001--174cf07aa6005e5237adf91f633d5415
Contains the scripts needed to perform the simulations with ABCtoolbox and fastsimcoal for the ABC analysis, and the reference tables for each simulated model. ReadMe files are... -
Supplemental File
Unique inflammatory profile is associated with higher SARS-CoV-2 acute respiratory distress syndrome (ARDS) mortality. We prospectively enrolled a cohort of 41 patients with... -
ModelVariation2
ABC toolbox model files (ms was the coalescent simulatior, MarkSim was used to generate mutations, arlsumstat was the summary statistic calculator) See ABC toolbox manual for... -
Polymorphism data
Microsatellite and nucleotide sequence data sets, used in the polymorphism study and the ABC analysis. ReadMe files describing the data are included in the directories. -
Posterior distribution median and 95% prediction intervals determined by ABC ...
The values fit were βM = 1.9, βP = 1.2, φM = 0.2, and φP = 0.2 for all but the North, where φ2 = 0.46. Version 4 consisted of fitting the regional best-fit model to each... -
A Beginners Guide to Approximate Bayesian Computation in Population Genetics
Tutorial on approximate Bayesian computation. The objective of the tutorial is to provide an insight and an intuition on how ABC works and its potential pitfalls, to give the... -
r37980778c78--69cb6f7a1d2aca176a864882b9ec64d1
Dalmatian sage (Salvia officinalis L., Lamiaceae) is a well-known aromatic and medicinal Mediterranean plant that is native in coastal regions of the western Balkan and southern...