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Selection experiment data
This file contains adult survival data and juvenile population counts during the course of the selection experiment described in the associated publication. The proportion of... -
dedup_wf_001--0d70ba401028555fe4c68840718be5fd
Standard input file for BLAST2GO. This file can be loaded directly into .jnlp executable file downloaded from BLAST2GO website. Includes BLASTX results against NCBI’s... -
dedup_wf_001--417836f8e8784abda81d93cfec196e64
Genotypes for European lines of A. thaliana (Chromosome 1) genotyped at a density of one SNP per kb. These data are used in our tutorial example 2 and supplementary file 2. Data... -
D. melanogaster median Fst and latitude
D. melanogaster Fst values for pair-wise population comparisons and the latitude of each population. The analysis of isolation by distance used the median Fst (median.Fst) and... -
TLR1LB_All_genotypes2015
This is the output file with Phase results for TLR1LB in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
Information on SNPs identified from transcriptome data (vcf file)
SNPs identified from transcriptome alignment files in variant call format. SNPs were identified using GATK. Parameters and filters for calling SNPs are listed in header.... -
Plink .bim file used for Exploratory Behaviour analysis
Contains marker information for 459,502 autosomal SNPs -
longdataYEAR1
Data for the first year's experiment. Under Rearing_environment, exp is the experimental stream and lab the hatchery. -
TLR3_All_genotypes2015
This is the output file with Phase results for TLR3 in Berthelot's pipits. This is a fasta file but should be opened using a text editor such as Notepad -
Origin and number of frogs used for mtDNA analysis
Populations, geographic coordinates and sample sizes of samples used for mtDNA analysis. The column “Microsat No.*” refers to the numbering of populations in Table S1 (new),... -
grseasRasters
Compressed directory with growing season condition rasters. Data sources and calculation details are found in the Molecular Ecology article (Lasky et al. 2012). These rasters... -
26snp_reference data for analysis of assignment
Reference data (individual genetic data (26 SNP's for each ind) for the North sea and coastal component). SNP's are described in paper.The other file contains inds that was... -
code to get pairwise bottleneck distance between islands
This file contains an R code to get pairwise bottleneck distances -
Plink .bed file used for Exploratory Behaviour analysis
Contains data on 415 birds typed at 459,502 autosomal SNPs -
Bayenv2 matlab export script - chromosome X
A script to export the output of Bayenv2 into a Matlab file (X chromosome). -
Pairwise FST estimates for autosomal SNPs
A Matlab file containing 3663890 autosomal SNPs, their pairwise FST estimates, and P-values for each SNP derived from coalescent simulations. -
Populations_Fitness_Data
Results of competition experiments designed to estimate the fitness of evolving E. coli populations relative to their common ancestor -
AFLP data matrix of Eichhornia crassipes
AFLP data matrix of 49 water hyacinth (Eichhornia crassipes) populations from its native and introduced ranges. If you have any problem with the data, please contact...
