165 items found

Tags: keywords.Structural Biology

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  • publication

    A phosphoinositide map at the shoot apical meristem in Arabidopsis thaliana

    Background In plants, the shoot apical meristem (SAM) has two main functions, involving the production of all aerial organs on the one hand and self-maintenance on the other,...
  • publication

    GTZ: a fast compression and cloud transmission tool optimized for FASTQ files

    Background The dramatic development of DNA sequencing technology is generating real big data, craving for more storage and bandwidth. To speed up data sharing and bring data to...
  • publication

    Updated and standardized genome-scale reconstruction of <i>Mycobacterium tube...

    Background The efficacy of antibiotics against M. tuberculosis has been shown to be influenced by experimental media conditions. Investigations of M. tuberculosis growth in...
  • publication

    In silico evaluation and exploration of antibiotic tuberculosis treatment reg...

    Background Improvement in tuberculosis treatment regimens requires selection of antibiotics and dosing schedules from a large design space of possibilities. Incomplete knowledge...
  • publication

    Nanog induced intermediate state in regulating stem cell differentiation and ...

    Background Heterogeneous gene expressions of cells are widely observed in self-renewing pluripotent stem cells, suggesting possible coexistence of multiple cellular states with...
  • publication

    Canary: an atomic pipeline for clinical amplicon assays

    Background High throughput sequencing requires bioinformatics pipelines to process large volumes of data into meaningful variants that can be translated into a clinical report....
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    Systems healthcare: a holistic paradigm for tomorrow

    Systems healthcare is a holistic approach to health premised on systems biology and medicine. The approach integrates data from molecules, cells, organs, the individual,...
  • publication

    Visualizing histopathologic deep learning classification and anomaly detectio...

    Background There is growing interest in utilizing artificial intelligence, and particularly deep learning, for computer vision in histopathology. While accumulating studies...
  • publication

    A powerful parent-of-origin effects test for qualitative traits on X chromoso...

    Background Genomic imprinting is one of the well-known epigenetic factors causing the association between traits and genes, and has generally been examined by detecting...
  • publication

    Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular i...

    [Background]: Systems biologists study interaction data to understand the behaviour of whole cell systems, and their environment, at a molecular level. In order to effectively...
  • publication

    Factors driving metabolic diversity in the budding yeast subphylum

    Background Associations between traits are prevalent in nature, occurring across a diverse range of taxa and traits. Individual traits may co-evolve with one other, and these...
  • publication

    Prioritization, clustering and functional annotation of MicroRNAs using laten...

    Background The amount of scientific information about MicroRNAs (miRNAs) is growing exponentially, making it difficult for researchers to interpret experimental results. In this...
  • publication

    Discovering the 'Dark matters' in expression data of miRNA based on the miRNA...

    Background Since miRNAs can play important roles in different cancer types, how to discover cancer related miRNAs is an important issue. In general, the miRNAs with differential...
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    Bioinformatics identification of new targets for improving low temperature st...

    Background Phenotypic studies in Triticeae have shown that low temperature-induced protective mechanisms are developmentally regulated and involve dynamic acclimation processes....
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    The conformational feasibility for the formation of reaching dimer in ASV and...

    Retroviral integrases are reported to form alternate dimer assemblies like the core-core dimer and reaching dimer. The core-core dimer is stabilized predominantly by an...
  • publication

    Combining location-and-scale batch effect adjustment with data cleaning by la...

    Background In the context of high-throughput molecular data analysis it is common that the observations included in a dataset form distinct groups; for example, measured at...
  • publication

    SemaTyP: a knowledge graph based literature mining method for drug discovery.

    Background Drug discovery is the process through which potential new medicines are identified. High-throughput screening and computer-aided drug discovery/design are the two...
  • publication

    ImageJ2: ImageJ for the next generation of scientific image data

    Background ImageJ is an image analysis program extensively used in the biological sciences and beyond. Due to its ease of use, recordable macro language, and extensible plug-in...
  • publication

    Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caen...

    Background: Many pathogens secrete toxins that target key host processes resulting in the activation of immune pathways. The secreted Pseudomonas aeruginosa toxin Exotoxin A...
  • publication

    SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data fro...

    Background Whole genome and exome sequencing usually include reads containing mitochondrial DNA (mtDNA). Yet, state-of-the-art pipelines and services for human nuclear genome...