58 items found

Tags: RNAseq

Filter Results
  • publication

    Equine skeletal muscle adaptations to exercise and training: evidence of diff...

    Background A single bout of exercise induces changes in gene expression in skeletal muscle. Regular exercise results in an adaptive response involving changes in muscle...
  • publication

    Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data.

    Background Aneuploidies are copy number variants that affect entire chromosomes. They are seen commonly in cancer, embryonic stem cells, human embryos, and in various trisomic...
  • publication

    Patterns of cross-contamination in a multispecies population genomic project:...

    Background Contamination is a well-known but often neglected problem in molecular biology. Here, we investigated the prevalence of cross-contamination among 446 samples from 116...
  • publication

    Clam focal and systemic immune responses to QPX infection revealed by RNA-seq...

    Background The hard clam Mercenaria mercenaria is an important seafood species widely exploited along the eastern coasts of the United States and play a crucial role in coastal...
  • publication

    The human olfactory transcriptome

    Background Olfaction is a versatile sensory mechanism for detecting thousands of volatile odorants. Although molecular basis of odorant signaling is relatively well understood...
  • dataset

    Additional file 2: of Effects of adult temperature on gene expression in a bu...

    Data S1. This data file contains all original data from the differential expression analysis based on cluster of orthologous groups and eukaryotic orthologous groups. (XLSX 1045...
  • dataset

    Additional file 2: of Concurrent and long-term associations between the endom...

    Figure S1. Linear regression of 39 endometrial genes differentially expressed in lactating dairy cows between week 5 and week 9 postpartum in cows that were either cycling or...
  • dataset

    dedup_wf_001--179a25852cbcd9b292a200a7546347ba

    Assemblage of the 26 new libraries was done using Trinity with default settings (Haas et al. 2013)⁠. A reference transcriptome was constructed using the transcriptome assembly...
  • dataset

    Summary statistics.

    Values are presented as Mean ±SEM. Abbreviations: fWHR [34]; EME [44]; ULh, LLh and Nw [33]; Index 1 [47], Index 2 [48], [50], Index 3 [10], [49], ProcDist [54], [79], DiscSco1...
  • dataset

    Additional file 1: of Transcriptome analysis of bolting in A. tequilana revea...

    Stages of bolting and examples of SAM tissue in A. tequilana. (ZIP 549 kb)
  • dataset

    qPCR1

    raw data from the qPCR analyses
  • dataset

    dedup_wf_001--48e1e125978a494c410caeffa0b3ee9c

    Effect of laboratory and sequencing center variables on the probability of contamination, with the minimal cox1 divergence between contaminant and contaminated species being set...
  • dataset

    Trimmed RNAseq for Sorghum_11_reverse_paired

    Trimmed RNAseq for Sorghum_11_reverse_paired
  • dataset

    Additional file 1: of Culturing C2C12 myotubes on micromolded gelatin hydroge...

    CAD file for generating silicon wafer. (GDS 318Â kb)
  • dataset

    Population Genomics Data for Bombus bifarius color pattern divergence

    double digest radseq and rnaseq files for samples across a color pattern and spatial transect for the widespread western North American bumble bee, Bombus bifarius. The included...
  • dataset

    RNAseq raw data

    BAM files and associated references. SRA accession: PRJNA508392
  • dataset

    Additional file 3: of Genome-wide RNAseq study of the molecular mechanisms un...

    Table S2. The list of DEGs in three microglia transcriptomic studies. (XLSX 240 kb)
  • dataset

    Additional file 1: of Concurrent and long-term associations between the endom...

    Table S1. Relative abundance of operational taxonomic units in endometrium of postpartum dairy cows. Table S2. Endometrial genes differentially expressed at week 5 postpartum...