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Cnidaria: fast, reference-free clustering of raw and assembled genome and tra...
Abstract Background Identification of biological specimens is a requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without... -
Millstone: software for multiplex microbial genome analysis and engineering
Abstract Inexpensive DNA sequencing and advances in genome editing have made computational analysis a major rate-limiting step in adaptive laboratory evolution and microbial... -
Wnt signal transduction pathways: modules, development and evolution
Abstract Background Wnt signal transduction pathway (Wnt STP) is a crucial intracellular pathway mainly due to its participation in important biological processes, functions,... -
Structural and mechanistic analysis of engineered trichodiene synthase enzyme...
Trichoderma spp. are well-known bioagents for the plant growth promotion and pathogen suppression. The beneficial activities of the fungus Trichoderma spp. are attributed to... -
Transformation media that turn a narrow slit into a large window
Based on the transformation media theory, the authors propose a way to replace a wide window with a narrow slit filled with designed metamaterial to achieve the same... -
Can conservation targets for imperilled freshwater fishes and mussels be achi...
Abstract Background Captive breeding programs are one of the many tools used by conservation practitioners as a means of conserving, supporting, and supplementing populations of... -
Introducing Explorer of Taxon Concepts with a case study on spider measuremen...
Abstract Background Taxonomic descriptions are traditionally composed in natural language and published in a format that cannot be directly used by computers. The Exploring... -
Linking the International Wheat Genome Sequencing Consortium bread wheat refe...
Abstract The Wheat@URGI portal has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence... -
LCQS: an efficient lossless compression tool of quality scores with random ac...
Abstract Background Advanced sequencing machines dramatically speed up the generation of genomic data, which makes the demand of efficient compression of sequencing data... -
A program to compute the soft Robinson–Foulds distance between phylogenetic n...
Abstract Background Over the past two decades, phylogenetic networks have been studied to model reticulate evolutionary events. The relationships among phylogenetic networks,... -
Inbreeding and runs of homozygosity before and after genomic selection in Nor...
Abstract Background While autozygosity as a consequence of selection is well understood, there is limited information on the ability of different methods to measure true...
