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PathoPhenoDB: a database of pathogen-phenotype associations
PathoPhenoDB is a database containing pathogen-to-phenotype associations mined from the scientific literature. PathoPhenoDB relies on manual curation of pathogen-disease... -
A family of auxin conjugate hydrolases from Solanum lycopersicum and analysis...
Abstract Background Auxin conjugates are hydrolyzed to release free auxin to ensure defined cellular auxin levels or gradients within tissues for proper development or response... -
Database of mechanism of action paths for selected drug-disease indications
Mechanistic paths that lead from drug to disease in a heterogeneous network. Version 1.1.0 includes a new tab metapaths_biolink where the majority of node and edge types have... -
Landscape of gene fusions in epithelial cancers: seq and ye shall find
Abstract Enabled by high-throughput sequencing approaches, epithelial cancers across a range of tissue types are seen to harbor gene fusions as integral to their landscape of... -
pTuneos: prioritizing tumor neoantigens from next-generation sequencing data
Abstract Background Cancer neoantigens are expressed only in cancer cells and presented on the tumor cell surface in complex with major histocompatibility complex (MHC) class I... -
Main SNP file STRUCTURE format
Dataset of 3764 SNP structure file. Population information included in second column. -
An integrated framework for the identification of potential miRNA-disease ass...
MicroRNAs (miRNAs) play an important role in prevention, diagnosis and treatment of human complex diseases. Predicting potential miRNA-disease associations could provide... -
Study dataset.
Compliance with NPG checklist items: data dictionary available in project space. In version 2, 7 errors from the previous version at database lock (publication date for PMID... -
Kras_10-5_132136_filtered.csv
A gzipped csv documenting the tag, read sequence, and associated qualities of all reads matching the majority read length (documented in read lengths csv) of PCR-based 10^-5... -
mtDNA alignment
Mitochondrial (COI) alignment of Parasemia plantains used in the paper "Temporal relationship between genetic and warning signal variation in the aposematic wood tiger moth... -
Supplementary Data: "Challenges In Automated High-Throughput Ab Initio Thermo...
These supplementary data contain input and output files of EMTO density-functional theory (DFT) calculations and IPython/Jupyter notebooks that were used in analyzing the... -
MOESM2 of Bioinformatics studies of Influenza A hemagglutinin sequence data i...
Additional file 2. Complete sequence data of the hemagglutinins identified as leading to recombination-like events listed in Additional file 1 and Table 3 are included as text... -
dedup_wf_001--5c9058e239cd921df28156154d7c5a76
This dataset is obtained from http://www.rna.icmb.utexas.edu/SIM/4D/Mollusk/alignment.gb. This dataset in nexus format is converted from the original dataset in GenBank format... -
Spatial distribution of random velocity inhomogeneities in the southern Aegea...
This dataset contains supplementary files uploaded as part of the above journal article. 5 sub-datasets have been uploaded separately. The first sub-dataset contains the peak... -
dedup_wf_001--bf01533b74f5d1d9c59d087a1e3102f8
NEXUS file containing total concatenated mDNA, rDNA & nDNA and PAUP* 4.0 analysis commands from Jackson et al. ISE -
Information for BAM files on NCBI SRA
BAM files for 117 wolves, separated into genic and neutral regions. See paper text for details on alignment and mapping pipeline. -
VCF file containing imputed genotype data belonging to 67 newly sequenced and...
VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples which we analysed in Martiniano et al. (2017). -
dedup_wf_001--a9400776bb22c7e11f4d6fb9d9cbb5a0
The table shows the number of aggressive events by focal Hypsophrys nicaraguensis territory owners. The ID of the territory, sex of each focal individual, stimulus type, order... -
ModelSel_SWTH_2013_Dynamic
AIC model selection table and associated coefficients for Swainson’s thrush 2013 for dynamic models (colonization and extinction). Column names for the model coefficients use... -
CIViCmine
This describes the output files for the CIViCmine project. These files are loaded directly by the CIViCmine viewer. The code for this viewer is available in the CIViCmine Github...
