DNA barcode trnH-psbA is a promising candidate for efficient identification of forage legumes and grasses

Objective Grasslands are widespread ecosystems that fulfil many functions. Plant species richness (PSR) is known to have beneficial effects on such functions and monitoring PSR is crucial for tracking the effects of land use and agricultural management on these ecosystems. Unfortunately, traditional morphology-based methods are labor-intensive and cannot be adapted for high-throughput assessments. DNA barcoding could aid increasing the throughput of PSR assessments in grasslands. In this proof-of-concept work, we aimed at determining which of three plant DNA barcodes (rbcLa, matK and trnH-psbA) best discriminates 16 key grass and legume species common in temperate sub-alpine grasslands. Results Barcode trnH-psbA had a 100% correct assignment rate (CAR) in the five analyzed legumes, followed by rbcLa (93.3%) and matK (55.6%). Barcode trnH-psbA had a 100% CAR in the grasses Cynosurus cristatus, Dactylis glomerata and Trisetum flavescens. However, the closely related Festuca, Lolium and Poa species were not always correctly identified, which led to an overall CAR in grasses of 66.7 %, 50.0% and 46.4% for trnH-psbA, matK and rbcLa, respectively. Barcode trnH-psbA is thus the most promising candidate for PSR assessments in permanent grasslands and could greatly support plant biodiversity monitoring on a larger scale. Content of data file This data file contains all raw data obtained during the study. The full information on the project can be found on the BOLD database (http://www.boldsystems.org/index.php/Public_SearchTerms) using the search term SWFRG

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PID https://www.doi.org/10.6084/m9.figshare.c.4822440
PID https://www.doi.org/10.5281/zenodo.3597069
PID https://www.doi.org/10.6084/m9.figshare.c.4822440.v1
PID https://www.doi.org/10.5281/zenodo.3597068
URL http://dx.doi.org/10.5281/zenodo.3597069
URL https://zenodo.org/record/3597069
URL http://dx.doi.org/10.5281/zenodo.3597068
URL https://dx.doi.org/10.6084/m9.figshare.c.4822440
URL https://dx.doi.org/10.6084/m9.figshare.c.4822440.v1
URL https://figshare.com/articles/DNA_barcode_trnH-psbA_is_a_promising_candidate_for_efficient_identification_of_forage_legumes_and_grasses/11633463
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Access Right Open Access
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Author Loera-Sánchez, Miguel
Author Studer, Bruno
Author Kölliker, Roland
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Collected From Zenodo; Datacite; figshare
Hosted By Zenodo; figshare
Publication Date 2020-01-03
Publisher figshare
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keyword FOS: Biological sciences
keyword FOS: Earth and related environmental sciences
system:type dataset
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Source https://science-innovation-policy.openaire.eu/search/dataset?datasetId=dedup_wf_001::95b9d9de7e68ac0fe3740fdace72fdc4
Author jsonws_user
Last Updated 1 January 2021, 21:30 (CET)
Created 1 January 2021, 21:30 (CET)