SNCA targeted gDNA: PacBio raw data

The landscape of SNCA transcripts across synucleinopathies: New insights from long reads sequencing analysis   gDNA capture using IDT xGen® Lockdown® Probes and single-molecule sequencing 2µg of each gDNA sample was sheared to 6kb using the Covaris g-TUBE and ligated with barcoded adapters. An equimolar pool of 12-plex barcoded gDNA library (2µg total) was input into the probe based capture with a custom designed SNCA gene panel. A SMRTBell library was constructed using 626ng of captured and re-amplified gDNA (https://www.pacb.com/wp-content/uploads/Procedure-Checklist-%E2%80%93-Multiplex-Genomic-DNA-Target-Capture-Using-IDT-xGen-Lockdown-Probes.pdf).  A total of 3 SMRT Cells (6 hour movie) were sequenced on the PacBio Sequel platform using 2.0 chemistry.       Barcodes used for gDNA demultiplexing bc1001: gcagtcgaacatgtagctgactcaggtcacCACATATCAGAGTGCG bc1002: gcagtcgaacatgtagctgactcaggtcacACACACAGACTGTGAG bc1003: gcagtcgaacatgtagctgactcaggtcacACACATCTCGTGAGAG bc1004: gcagtcgaacatgtagctgactcaggtcacCACGCACACACGCGCG bc1005: gcagtcgaacatgtagctgactcaggtcacCACTCGACTCTCGCGT bc1006: gcagtcgaacatgtagctgactcaggtcacCATATATATCAGCTGT bc1007: gcagtcgaacatgtagctgactcaggtcacTCTGTATCTCTATGTG bc1008: gcagtcgaacatgtagctgactcaggtcacACAGTCGAGCGCTGCG bc1009: gcagtcgaacatgtagctgactcaggtcacACACACGCGAGACAGA bc1010: gcagtcgaacatgtagctgactcaggtcacACGCGCTATCTCAGAG bc1011: gcagtcgaacatgtagctgactcaggtcacCTATACGTATATCTAT bc1012: gcagtcgaacatgtagctgactcaggtcacACACTAGATCGCGTGT  

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PID https://www.doi.org/10.5281/zenodo.1560687
PID https://www.doi.org/10.5281/zenodo.1560688
URL http://dx.doi.org/10.5281/zenodo.1560688
URL https://zenodo.org/record/1560688
URL http://dx.doi.org/10.5281/zenodo.1560687
URL https://figshare.com/articles/SNCA_targeted_gDNA_PacBio_raw_data/11512815
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Access Right Open Access
Embargo End Date 2019-08-01
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Author Tseng, Elizabeth
Author Rowell, William J
Author Chiba-Falek, Ornit
Author Kujawa, Steve
Author Glenn, Omolara-Chinue
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Collected From Zenodo; Datacite; figshare
Hosted By Zenodo; figshare
Publication Date 2018-01-01
Publisher Zenodo
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Source https://science-innovation-policy.openaire.eu/search/dataset?datasetId=dedup_wf_001::91d44ee944864a2dec6655192b2fb81e
Author jsonws_user
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Last Updated 7 January 2021, 00:25 (CET)
Created 7 January 2021, 00:25 (CET)