S68 | HSDBTPS | Transformation Products Extracted from HSDB Content in PubChem

This is the collection associated with list S68 HSDBTPS Transformation Products Extracted from HSDB Content in PubChem on the NORMAN Suspect List Exchange. https://www.norman-network.com/nds/SLE/ HSDBTPS is a list of metabolites / transformation products extracted from the "Metabolites/Metabolism" section from HSDB (Hazardous Substance Data Bank) in PubChem (https://pubchem.ncbi.nlm.nih.gov/source/11933). Dataset DOI: 10.5281/zenodo.3827487. Entries automatically extracted from HSDB are manually validated to remove mismatching CIDs, and add additional CIDs not captured using the descriptions provided. Files are created with a default to not import any data until this has been checked. Please report any mismatches, despite best efforts it is possible that errors are present, all files are under version control so that entries can be corrected/updated/enhanced over time and recommitted. Code associated with this deposit is located here: https://git-r3lab.uni.lu/eci/pubchem/-/tree/master/annotations/tps/ Updates: 16 May 2020: Added the source file (extract of all HSDB Metabolites/Metabolism entries as is from JSON file), plus an updated S68_HSDBTPS_StructInfoOnly.csv with one new structure and renamed to include S68, plus the first draft of the Transformations table. 28 May 2020: added InChIKey and DIXSID files. 11 June 2020: added updated Transformations and Structure files to contain new CIDs and resulting reactions from new PubChem registrations.

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Identity

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Field Value
PID https://www.doi.org/10.5281/zenodo.3827488
PID https://www.doi.org/10.5281/zenodo.3830987
PID https://www.doi.org/10.5281/zenodo.3862861
PID https://www.doi.org/10.5281/zenodo.3890392
PID https://www.doi.org/10.5281/zenodo.3827487
URL http://dx.doi.org/10.5281/zenodo.3890392
URL http://dx.doi.org/10.5281/zenodo.3862861
URL https://figshare.com/articles/S68_HSDBTPS_Transformation_Products_Extracted_from_HSDB_Content_in_PubChem/12309242
URL http://dx.doi.org/10.5281/zenodo.3827488
URL https://figshare.com/articles/S68_HSDBTPS_Transformation_Products_Extracted_from_HSDB_Content_in_PubChem/12317906
URL http://dx.doi.org/10.5281/zenodo.3827487
URL http://dx.doi.org/10.5281/zenodo.3830987
Access Modality

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Access Right Open Access
Attribution

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Field Value
Author LCSB-ECI
Author Krier, Jessy
Author Schymanski, Emma, 0000-0001-6868-8145
Author PubChem Team
Author Bolton, Evan, 0000-0002-5959-6190
Author Thiessen, Paul, 0000-0002-1992-2086
Author Zhang, Jeff, 0000-0002-6192-4632
Publishing

Description: Attributes about the publishing venue (e.g. journal) and deposit location (e.g. repository)

Field Value
Collected From Zenodo; Datacite; figshare
Hosted By Zenodo; figshare
Publication Date 2020-05-14
Publisher Zenodo
Additional Info
Field Value
Language English
Resource Type Dataset
system:type dataset
Management Info
Field Value
Source https://science-innovation-policy.openaire.eu/search/dataset?datasetId=dedup_wf_001::77d028cfba84da9efffb4c637a079286
Author jsonws_user
Version NORMAN-SLE-S68.0.0.1
Last Updated 8 January 2021, 15:32 (CET)
Created 8 January 2021, 15:32 (CET)