Has large-scale named-entity network analysis been resting on a flawed assumption?

: The assumption that a name uniquely identifies an entity introduces two types of errors: splitting treats one entity as two or more (because of name variants); lumping treats multiple entities as if they were one (because of shared names). Here we investigate the extent to which splitting and lumping affect commonly-used measures of large-scale named-entity networks within two disambiguated bibliographic datasets: one for co-author names in biomedicine (PubMed, 2003-2007); the other for co-inventor names in U.S. patents (USPTO, 2003-2007). In both cases, we find that splitting has relatively little effect, whereas lumping has a dramatic effect on network measures. For example, in the biomedical co-authorship network, lumping (based on last name and both initials) drives several measures down: the global clustering coefficient by a factor of 4 (from 0.265 to 0.066); degree assortativity by a factor of ∼13 (from 0.763 to 0.06); and average shortest path by a factor of 1.3 (from 5.9 to 4.5). These results can be explained in part by the fact that lumping artificially creates many intransitive relationships and high-degree vertices. This effect of lumping is much less dramatic but persists with measures that give less weight to high-degree vertices, such as the mean local clustering coefficient and log-based degree assortativity. Furthermore, the log-log distribution of collaborator counts follows a much straighter line (power law) with splitting and lumping errors than without, particularly at the low and the high counts. This suggests that part of the power law often observed for collaborator counts in science and technology reflects an artifact: name ambiguity.

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PID https://www.doi.org/10.1371/journal.pone.0070299
PID pmc:PMC3722140
PID pmid:23894639
URL http://europepmc.org/articles/PMC3722140
URL http://ui.adsabs.harvard.edu/abs/2013PLoSO...870299F/abstract
URL https://dx.plos.org/10.1371/journal.pone.0070299
URL http://dx.doi.org/10.1371/journal.pone.0070299
URL https://paperity.org/p/60767284/has-large-scale-named-entity-network-analysis-been-resting-on-a-flawed-assumption
URL http://europepmc.org/articles/PMC3722140?pdf=render
URL https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3722140/
URL https://doaj.org/toc/1932-6203
URL http://dx.plos.org/10.1371/journal.pone.0070299
URL https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0070299&type=printable
URL https://dx.doi.org/10.1371/journal.pone.0070299
URL https://academic.microsoft.com/#/detail/2041309207
URL https://core.ac.uk/display/104808480
URL https://experts.illinois.edu/en/publications/has-large-scale-named-entity-network-analysis-been-resting-on-a-f
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Access Right Open Access
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Author Brent D. Fegley, 0000-0002-7739-7638
Author Vetle Torvik, 0000-0002-0035-1850
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Collected From Europe PubMed Central; PubMed Central; ORCID; UnpayWall; DOAJ-Articles; Crossref; Microsoft Academic Graph
Hosted By Europe PubMed Central; PLoS ONE
Journal PLoS ONE, ,
Publication Date 2013-07-01
Publisher Public Library of Science (PLoS)
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Language English
Resource Type Article; UNKNOWN
keyword Q
keyword R
keyword keywords.General Biochemistry, Genetics and Molecular Biology
system:type publication
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Source https://science-innovation-policy.openaire.eu/search/publication?articleId=dedup_wf_001::719c595cc3987e12882362ec93bd1f96
Author jsonws_user
Last Updated 26 December 2020, 18:13 (CET)
Created 26 December 2020, 18:13 (CET)