Transcription events constructed by txrevise

List of pre-computed transcription events constructed by txrevise. See the txrevise home page for more details: https://github.com/kauralasoo/txrevise. If you use txrevise in your research, please cite the following paper: Alasoo, Kaur, et al. "Genetic effects on promoter usage are highly context-specific and contribute to complex traits." Elife 8 (2019): e41673 We have constructed two types of events. In the main event files we have masked the alternative internal exons in the promoter and 3' end events (labeled upstream and downstream). This ensures that we can reliably distinguish promoter usage and 3' end usage from alternative splicing, which are likely to be driven by distinct molecular mechanisms. The main annotation files are: Homo_sapiens.GRCh37.87.version_1.tar.gz  Homo_sapiens.GRCh38.92.version_1.tar.gz  Homo_sapiens.GRCh38.96.version_1.tar.gz We have also constructed an alternative set of "raw" annotation files where the alternative internal exons in promoter and 3' end events have not masked. This maximises QTL discovery, because we can now also detect splicing event near promoters and 3 ends, but it comes at the expense that we are no longer able to distinguish between different molecular mechanisms. The raw annotation files are: Homo_sapiens.GRCh37.87.raw_events.version_1.tar.gz  Homo_sapiens.GRCh38.92.raw_events.version_1.tar.gz 

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PID https://www.doi.org/10.5281/zenodo.3232932
PID https://www.doi.org/10.5281/zenodo.1302499
PID https://www.doi.org/10.5281/zenodo.1302498
URL https://figshare.com/articles/Transcription_events_constructed_by_txrevise/8190098
URL http://dx.doi.org/10.5281/zenodo.3232932
URL https://zenodo.org/record/1302499
URL http://dx.doi.org/10.5281/zenodo.1302499
URL http://dx.doi.org/10.5281/zenodo.1302498
URL https://figshare.com/articles/Transcription_events_constructed_by_txrevise/11550753
URL https://zenodo.org/record/3232932
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Access Right Open Access
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Author Alasoo, Kaur, 0000-0002-1761-8881
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Collected From Zenodo; figshare; Datacite
Hosted By Zenodo; figshare
Publication Date 2018-07-01
Publisher Figshare
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Language UNKNOWN
Resource Type Dataset
system:type dataset
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Source https://science-innovation-policy.openaire.eu/search/dataset?datasetId=dedup_wf_001::701a1a05f1b59a9e98f1eb873e0a4948
Author jsonws_user
Last Updated 14 January 2021, 12:06 (CET)
Created 14 January 2021, 12:06 (CET)