272 items found

Types: software Tags: Genetics Plant Biology

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  • software

    Software used in 'Discontinuous Galerkin discretization for two-equation turb...

    This record collates DOIs for the software components used in 'Discontinuous Galerkin discretization for two-equation turbulence closure model'. The Firedrake components and...
  • software

    Code for a microRNA Conservation Bioinformatics Collaboration Between the Van...

    This code repository is a part of the the microRNA conservation bioinformatics collaboration between the Van Vactor Lab and Wall Lab, including Elizabeth M. McNeill, Todd F....
  • software

    The Turing Way: A Handbook for Reproducible Data Science

    Reproducible research is necessary to ensure that scientific work can be trusted. Funders and publishers are beginning to require that publications include access to the...
  • software

    OpenMC 0.6.1

    New Features Coarse mesh finite difference (CMFD) acceleration no longer requires PETSc Statepoint file numbering is now zero-padded Python scripts now compatible with...
  • software

    GLAM-Workbench/csv-explorer

    Cultural institutions are making collection data available as machine readable downloads. But how can researchers explore the shape and meaning of this data? How do they know...
  • software

    Biotite 0.5.3 repository

    Biotite is a comprehensive computational biology framework in Python for analysis and manipulation of sequence and structure data.
  • software

    Replication files for "It's Raining Men! Hallelujah? The Long-Run Consequence...

    This document presents data and programs used to produce empirical evidence presented in the article and in the Online Appendix. Codes for this paper were run using Stata. The...
  • software

    Ncrncornell/Ced2Arspssreader: 1.3.0

    CED2AR SPSS Reader This project contains java classes that will allow you to read several versions of SPSS data sets. It modifies the code originally written by Pascal Heus...
  • software

    [Artifact] BOLT: Optimizing OpenMP Parallel Regions with User-Level Threads

    PACT '19: Artifact of BOLT This is the artifact of the following paper: Shintaro Iwasaki, Abdelhalim Amer, Kenjiro Taura, Sangmin Seo, and Pavan Balaji, "BOLT: Optimizing...
  • software

    The jury is still out regarding the generality of adaptive "transgenerational...

    Code and data needed to reproduce the results shown in "The jury is still out regarding the generality of adaptive “transgenerational” effects" (first...
  • software

    glotzerlab/signac

    The signac framework helps users manage and scale file-based workflows, facilitating data reuse, sharing, and reproducibility. It provides a simple and robust data model...
  • software

    QPage - Free Project For Creating Academic Homepage Without Any Code

    QPage or QuickPage is a Free Project For Creating Academic Homepage Without Any Code Run setup (for the first use wait to create folders) You can download samples and...
  • software

    iLCSoft/ConformalTracking: v01-10

    v01-10 2019-10-08 Remi Ete (PR#55) ConformalTracking processor: Use streamlog macros instead of raw calls 2019-09-09 Andre Sailer (PR#54) Add Parameter TooManyTracks to...
  • software

    Unofficial Geant4 10.04.03 Windows Installer (full functionality) Visual Stud...

    Unofficial Windows installer for Geant4 10.04.03 (see also the official one https://geant4.web.cern.ch/node/1765). It is self-consistent, i.e. it does not require...
  • software

    labordynamicsinstitute/ldi-replication-dataprep: LDI Replication Lab Data Pre...

    These programs prepare and clean the raw data from the LDI Replication Lab. The output is manually curated on Zenodo, and used for downstream analysis.
  • software

    csadorf/signac: v0.6.2

    The signac framework aids in the management of large and heterogeneous data spaces. It provides a simple and robust data model to create a well-defined indexable storage layout...
  • software

    Software used in 'Testing'

    This records collates DOIs for the software components used in 'Testing'. The Firedrake components and dependencies used were: COFFEE (A Compiler for Fast Expression...
  • software

    ReproZip: 1.0.5

    (reprounzip-vagrant didn't change) Bugfixes: Correctly download parameters from server More reliable way of determining X server IP without using /bin/ip Downloads:...
  • software

    Gcube 4.1.1 - The Data Transfer Common Objects V. 2.0.1

    The gCube System - The Data transfer common objects -------------------------------------------------- The Data transfer common objects This software is part of the gCube...
  • software

    bigSCale2

    Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data.