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Meeting report: GenBank microbial genomic taxonomy workshop (12â 13 May, 2015)
Abstract Many genomes are incorrectly identified at GenBank. We developed a plan to find and correct misidentified genomes using genomic comparison statistics together with a... -
MOESM2 of Genomic inbreeding coefficients based on the distribution of the le...
Additional file 2. Inbreeding.example. This file contains a small dataset with information on ROH length for two individuals on chromosome 1. The variables are: nchro: number of... -
Identification of nucleoid associated proteins (NAPs) under oxidative stress ...
Abstract Background Bacterial nucleoid consists of genome DNA, RNA, and hundreds of nucleoid-associated proteins (NAPs). Escherichia coli nucleoid is compacted towards the... -
Additional file 5: Figure S2. of Asymmetric somatic hybridization induces poi...
Characterization of indels. (A) An insertion (291–764) present in an SR3 unigene has flanking sequence which matches that in its JN177 homolog. (B) A deletion (490–523) present... -
Leveraging 3D chemical similarity, target and phenotypic data in the identifi...
Abstract Background Drug-target identification is crucial to discover novel applications for existing drugs and provide more insights about mechanisms of biological actions,... -
Additional file 1: Table S1. of De novo assembly and an...
List of annotated unigenes and lists of up-regulated genes and down-regulated genes in chilling-treated samples. (XLS 14564 kb). -
Additional file 2: Figure S1. of Critical illness polyneuropathy in ICU patie...
MEMFIT data showing best fit of current changes in % for ICU controls. GKfl, internodal fast K conductance; GKfN, nodal fast K conductance; GKsN, nodal slow K conductance, PNa p... -
Detection of cytosine and CpG density in proto-oncogenes and tumor suppressor...
Aberrant methylation is one of the driving forces of cancer genome development. Although the rate of methylation appears massively variable across the genome, it is mainly... -
Additional file 2: of Molecular typing of Leptospira interrogans serovar Hard...
Sequences included in molecular phylogenetic analysis (GenBank access). (XLS 43 kb) -
Additional file 4: of The associations between socioeconomic status and risk ...
Incidence rate ratios of Staphylococcus aureus bacteremia according to income. Incidence rate ratios (IRR) of Staphylococcus aureus bacteremia according to income stratified by... -
Additional file 2: Table S2. of Midgut proteome of an argasid tick, Ornithodo...
Non-redundant tick proteins identified in the midgut of engorged ticks at 48 h post-feeding (fed group). (XLSX 115 kb) -
Additional file 2: Figure S1. of Epigenetic regulation of CDH1 exon 8 alterna...
Methylation status of CDH1 exon 7 in human gastric mucosal epithelial cell line GES-1 and the GC cell lines SGC-7901, BGC-823 and MGC80-3. DNA isolated from cells shows a high C... -
A statistical inference course based on p-values
Introductory statistical inference texts and courses treat the point estimation, hypothesis testing, and interval estimation problems separately, with primary emphasis on... -
Additional file 2: of 3CPET: finding co-factor complexes from ChIA-PET data u...
Excel file listing the inferred ER-alpha and RNAP-II related networks. (XLSX 35 kb) -
Additional file 1: Table S1. of Draft genome sequences of eight bacteria isol...
Additional strain information, including growth conditions and genome completeness/contamination. (XLSX 36 kb) -
Data normalization considerations for digital tumor dissection
Abstract In a recently published article in Genome Biology, Li and colleagues introduced TIMER, a gene expression deconvolution approach for studying tumor-infiltrating... -
Reduction in clinically important deterioration in chronic obstructive pulmon...
Abstract Background ‘Clinically important deterioration’ (CID) is a composite endpoint measuring worsening of the key clinical features of chronic obstructive pulmonary disease... -
Additional file 12: of Comparative analyses of glycerotoxin expression unveil...
Set of primers used to analyze the molecular organization of the GLTx gene. sheet a Primer used to amplify GLTx fragments before cloning into the pGEMÂŽ -T Vector (pGEMÂŽ-T... -
Additional file 8: of Concordance analysis of microarray studies identifies r...
Hierarchical clustering of studies based on the most highly differentially expressed genes in each study, complete linkage. (XLSX 154Â kb) -
Optic-nerve-transmitted eyeshine, a new type of light emission from fish eyes
Abstract Background Most animal eyes feature an opaque pigmented eyecup to assure that light can enter from one direction only. We challenge this dogma by describing a...
