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Additional file 3: Table S3. of Cnidaria: fast, reference-free clustering of ...
Statistics of k-mer counting. Total number of k-mers in each sample, total number of valid k-mers in each sample (k-mers shared by at least two samples) and the percentage of... -
Additional file 6: Table S6. of Cnidaria: fast, reference-free clustering of ...
List of samples used for the 1-nearest-neighbour analysis for species classification and their respective taxonomic ranks. (XLS 26Â kb) -
dedup_wf_001--7cca8b41a7fd61746dd4b189713dd546
Sample description. Intermediate headers show database size and analysis time running with 1 thread (1×) or 20 threads (20×) for each CNIDARIA database group. Each line contains... -
Additional file 4: Table S4. of Cnidaria: fast, reference-free clustering of ...
Matrix containing pairwise Jaccard distance between samples. The diagonal is blanked but contains zeroes, meaning identity; 11, 15, 17, 21 and 31-mers are shown, as well as the... -
Cnidaria: fast, reference-free clustering of raw and assembled genome and tra...
Background: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unprocessed sequencing data without relying... -
Additional file 7: Table S7. of Cnidaria: fast, reference-free clustering of ...
1-nearest-neighbour accuracy results for all k-mer sizes, distance measures and programs. CNIDARIA is tested against all k-mer sizes. REFERENCEFREE is tested using 21-mers.... -
Additional file 5: Table S5. of Cnidaria: fast, reference-free clustering of ...
List of samples used for the 1-nearest-neighbour analysis for supra-species classification and their respective taxonomic ranks. (XLS 29Â kb)
