14 items found

Tags: Molecular Biology environmental DNA

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  • dataset

    dedup_wf_001--bf8b05da55dfd824055aad285e43ef76

    This table includes results from cloning and direct sequencing after DHPLC collection, along with the Genbank accession numbers of the retrieved sequences. Reference is made to...
  • dataset

    dungbeetle_intermediate_results

    This file presents filtered data after the OBITools analysis and removing the contaminants, but before the manual inspection. It contains the number of occurrences of each...
  • dataset

    dedup_wf_001--ab4dc383b672477e6fac930cb67b0ab7

    Raw FASTQ files for COI marker PCR-amplified using either the published touchdown (TD) or a single annealing temperature (46) thermal cycling protocol.
  • dataset

    Run3

    Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer...
  • dataset

    Run1

    Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer...
  • dataset

    Reverse reads (part 1)

    Compressed FASTQ file containing the first half of the reverse reads.
  • dataset

    INmorph

    List of extractions and morphological sampling results. Columns: Extraction, Shop name (anonymized to protect proprietor), Region, State, Advertised species, Extraction,...
  • dataset

    Metadata file

    A metadata file describing the contents of the data. There are six data files in total associated with this dataset. This metadata file provides background information on each...
  • dataset

    Reverse reads (part 2)

    Compressed FASTQ file containing the second half of the reverse reads.
  • dataset

    Run2

    Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer...
  • dataset

    BlastCycle500

    Perl script returns top 500 BLAST results for each results file in a directory.
  • dataset

    Mam 16S

    Mam 16S
  • dataset

    NGSfilter file.

    The ngsfilter file containing the sample - PCR tag information necessary for demultiplexing the sequence data in OBITools.
  • dataset

    Run4

    Compressed file containing: 1) Forward sequence file; 2) Reverse sequence file; 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer...