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SUMOHeratoPHASED
DNA sequence data for the gene SUMO-1 activating enzyme (sae-1) for multiple individuals for multiple races of Heliconius erato. The data is derived from direct sequencing,... -
Supplementary data
Supplementary data includes the RAxML phylogram for the concatenated dataset (16S rRNA, 28S rRNA, COI and H3), the BEAST input xml file and the BEAST MCC tree file. For details... -
Structure infile
File contains input data file for Structure analysis. In first column is sample ID (nz=New Zealand, uk=United Kingdom, mc=Macreas flat, t=Twizel, ml=Molesworth, p=Palemrston, A=... -
Lemmus.partial.inputMrBayes
Input file to MrBayes for analysing the partial dataset, using Mictotus as an outgroup -
De-multiplexing Functions
Functions in R for de-multiplexing (assigning sample identify for each read using the sequence barcode at the beginning of the read) the raw sequencing data. The raw data itself... -
dedup_wf_001--043f55f2a31b796bfeb87f6fc503f230
*Beast XML input file for species delimitation analysis (hypothesis 1). This file includes data from both markers (COI and H3) and individuals sorted into four species (Sicarius... -
dedup_wf_001--4ff8b7004cd777298251d90ad049dd97
Output phylogenetic tree file from the program SNAPP, based on data and parameters in the input file Dataset_S4. -
Sampling details.
Indicated are: the region of origin (GB: Galicia Bank region, A: Algerian basin, AP: Algero-Provençal basin, I: Ionian basin, L: Levantine basin), the period samples were... -
structure_input
This is a tab-delimited text file containing the nuclear marker genotypes at 9 microsatellite markers and 3 coding genes for 409 Radix snails from the core and extended... -
Migrate - SanPedro
MIGRATE-n file containing the microsatellite data (14 markers) of the freshwater fish Galaxias platei in the San Pedro system in Nothern Patagonia. The parmfile for this run is... -
Supplemental Data 1
Phylogenetic dataset (TNT) used in the study. The TNT file can be converted to .nex from the ‘export (nexus format)’ function in TNT, or alternatively can be opened by ‘open... -
nova_empirical_data
Empirical SNP dataset for Carex nova. These data were used to create summary statistics in arlsumstat for comparison with modeled data in the ABC procedure. They also informed... -
R code for sPCA, DAPC, and Mantel tests
This file contains the R script used for DAPC, sPCA, and Mantel test analyses. Input files are contained in the input files zip archive separately available on Dryad. -
dedup_wf_001--66817b660c5aafb9d7466e488a12d40f
Includes fasta sequence files, microsatellite genotype files, as well as other input files -
full-cytb GARLI ML tree
Newick format tree file containing the single 'best' maximum-likelihood tree resulting from analysis of the full-cytb dataset in GARLI v2.0. -
LAMARC-mtDNA.input
Input file for estimating theta and migration rates under a stepping-stone model for mtDNA sampled from six populations of Mergus merganser. -
MUSK_I3_File
MUSK_I3_File: Bee hummingbirds sequences of the Z-linked muscle, skeletal, receptor tyrosine kinase intron 3 (nuDNA). -
Sampling locations.
*Transect refers to the straight distance along which samples were collected at each site. The three sites for P. jubatus are contained within the Munchique National Park (Fig. 2). -
BAMM phenotype edata object -- BEAST: part A
BAMM edata object for phenotype using the BEAST congruified tree. This is an Rdata file to be loaded in R that has been divided into three parts. Concatenate file parts A, B,...
