109 items found

Types: software Tags: Molecular Biology Biochemistry

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  • software

    Software used in 'Discontinuous Galerkin discretization for two-equation turb...

    This record collates DOIs for the software components used in 'Discontinuous Galerkin discretization for two-equation turbulence closure model'. The Firedrake components and...
  • software

    A Jupyter Notebook to Describe URLs from Journal documents

    A notebook with a script that harvest a Journal articles using OAI-PHM, download articles files and convert to text, cralws referenced URLs checking its HTTP reponse codes....
  • software

    r37980778c78--6ef4046a680a2c1048890727a3769f23

    "Blaster" is a Microsoft Windows-based sequence processing and analysis tool that provides simple and intuitive graphical user interface to some of the most common tools for...
  • software

    r37980778c78--343d41a29d705aeca0fd51fa35196d86

    Experiments testing subset selection procedures such as OCBA-m and BootComp
  • software

    labordynamicsinstitute/ldi-replication-dataprep: LDI Replication Lab Data Pre...

    These programs prepare and clean the raw data from the LDI Replication Lab. The output is manually curated on Zenodo, and used for downstream analysis.
  • software

    r37980778c78--a2fc1054489a79693e137eda44d9e12d

    Natural products (NPs), often also referred to as secondary metabolites, are small molecules synthesized by living organisms. Natural products are of interest due to their...
  • software

    r37980778c78--8d6f5f8e6b980bd90951cf8b2e8ead3a

    Tool for the determination of simultaneity factors in PEV charging processes
  • software

    r37980778c78--a7007b3b8857f74a7474f892a71f9acf

    This record collates DOIs for the software components used in 'Code generation for generally mapped finite elements'. The Firedrake components and dependencies used were:...
  • software

    Poly-(3-hexylthiophene) Model and Code for Molecular Dynamic Simulations

    Here we present files necessary for simulating our united-atom poly-(3-hexylthiophene) model in molecular dynamics. The input file "P3HT_Blends.py" acts a wrapper...
  • software

    cwi-swat/jsep-sloc-versus-cc: Scripts and Data used for the Empirical analysi...

    This archive contains a Rascal-MPL Eclipse project used to parse and calculate the metrics for the Java corpus and analyze the metrics from the Java corpus and the C corpus for...
  • software

    CLARIAH/grlc 1.1

    grlc is a lightweight server that takes SPARQL queries curated in GitHub repositories, and translates them to Linked Data Web APIs. This enables universal access to Linked Data....
  • software

    r37980778c78--f5062bf6ac5079c39371b42fa4dcaf47

    GenerateAG.m is a short MATLAB script that calculates a restricted generalized inverse AG using input data from an atmospheric photochemistry mechanism. The inverse problem...
  • software

    r37980778c78--99fb8ade83011b2e6853edcf9d5dd77d

    KNIME nodes for KripoDB (https://github.com/3D-e-Chem/kripodb). KripoDB is a Python package used to interact with Kripo fragment, fingerprint and similarity data files. KRIPO...
  • software

    filter_fasta.py

    Usage: ./filter_fasta.py [path to input dir] [path to accepted taxon list]. Input files are expected to be in fasta format. The script will traverse all files in the input dir,...
  • software

    SI for "A Computational Study of Structural and Excitonic Properties of Chlor...

    files in chapter * are stored in chapter_* folders note for CTubeGen software in chapter_5 folder A software I developed for generating arbitrary chlorosomal tubes,...
  • software

    Operator Discretization Library (ODL)

    Operator Discretization Library (ODL) is a Python library for fast prototyping focusing on (but not restricted to) inverse problems. The main intent of ODL is to enable...
  • software

    r37980778c78--905748fea9521b1bf8cb506b658c4d2b

    This file contains all the scripts and formated data that were used for the ms entitled "The quiescent X, the replicative Y and the Autosomes" by Achaz et al. The biorxiv...
  • software

    r37980778c78--97d0a52e5b396c15f61aff3030b1e46e

    Includes compiled standalone apps for Apple Mac OSX (BeamformingAlgComp_Listen_v1_MAC.zip) and Windows (BeamformingAlgComp_Listen_v1_WIN.zip). Just extract the file and run the...
  • software

    r37980778c78--a0bcf6504cc06193de8c60b36be72a9d

    This Julia code is accompanying the paper Decompounding discrete distributions: a non-parametric Bayesian approach by Shota Gugushvili, Ester Mariucci and Frank van der Meulen....
  • software

    TractSeg pretrained weights - endings_segmentation

    Pretrained weights for TractSeg for output type "endings_segmentation".