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Stein et al. 2015 Fig. 1 in newick file format
Phylogenetic hypothesis resulting from analysis of the molecular data matrix in the newick file format. -
RatDems-ML-RELATE-PL9-V3
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in site 9 in Pau da Lima (valley 3) are included in this file to test for pairwise... -
RatDems-ML-RELATE-PL2-V2
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in site 2 in Pau da Lima (valley 2) are included in this file to test for pairwise... -
RatMsat17LociClean-STRUCTURE
Genotype data from 146 trapped individuals formatted for STRUCTURE, with animals grouped by sampling site and year. "RatDemographics" or "RatDems" refers to the excel sheet this... -
RatDems-House15-ML-RELATE
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in House 15 in Pau da Lima are included in this file to test for pairwise relatedness... -
Stein et al. 2015 Fig. 1 in nexus file format
Phylogenetic hypothesis resulting from analysis of the molecular data matrix in the nexus file format. -
RatDemographics-STRUCTUREPL8sep
Genotype data from 146 trapped individuals formatted for STRUCTURE, with animals grouped by sampling site with Pau da Lima site 8 separated by sampling year (clustering analyses... -
RatDemographics-ARLEQUIN-PL8sep
Genotype data from 146 trapped individuals formatted for Arlequin, with animals grouped by sampling site with Pau da Lima site 8 separated by sampling year (clustering analyses... -
dedup_wf_001--d27c6e803483c66c9a4b6bce3425c16b
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in site 1 in Pau da Lima (valley 1) are included in this file to test for pairwise... -
Data files and analysis scripts
Raw data on social interactions and testosterone levels plus R scripts with annotated analysis -
RatDems-Clusters-LDNE
Genotype data from trapped individuals formatted for LDNe, with animals grouped by structure clusters. "RatDemographics" or "RatDems" refers to the excel sheet this file was... -
Maize SNP calls
Binary plink-formatted files containing the complete set of SNP calls before processing for linkage. -
dedup_wf_001--0ea6e16c6a49a36e89ccdc6cb3aaf077
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in site 8 in Pau da Lima (valley 2) are included in this file to test for pairwise... -
dedup_wf_001--1e592d1981c6030be8bf9a04c73f767f
Genotype data from 146 trapped individuals formatted for Genepop, with animals grouped by sampling site with Pau da Lima site 8 separated by sampling year (clustering analyses... -
RatDemographics-GENECLASS-PL8sep
Genotype data from 146 trapped individuals formatted for Geneclass, with animals grouped by sampling site with Pau da Lima site 8 separated by sampling year (clustering analyses... -
RatDems-House5-ML-RELATE
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in House 5 in Pau da Lima are included in this file to test for pairwise relatedness within... -
RatDems-ML-RELATE-SA3-V5
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in site 3 in Sete de Abril (valley 5) are included in this file to test for pairwise... -
RatDems-ML-RELATE-PL6-V4
Genotype data from trapped individuals formatted for ML-Relate. Only animals captured in site 6 in Pau da Lima (valley 4) are included in this file to test for pairwise... -
Excel sheet
This Excel file contains information only for the populations used in the study. The sheet contains locality, GPS, voucher and genbank accession numbers. Some sequences were not... -
RatDemsPL8sep
Genotype data from 146 trapped individuals formatted for FSTAT, with animals grouped by sampling site with Pau da Lima site 8 separated by sampling year (clustering analyses...
