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Flow data
Flow_Data.csv – Data produced from the Flow Experiment. Fields: pore_size – the filter pore size in µm. particle – the level of suspended particulate matter on the sampling... -
dedup_wf_001--8f19a8c97b2674ca9e1aefe9695a9ced
Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer... -
Run5
Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer... -
Prey Sample by OTU
Sequence counts in individual scat samples matching reference sequences of extant vertebrates (potential prey species of mesocarnivores) in the Santa Cruz Mountains. Scat... -
OTU table for blanks
Blanks were run on separate sequencing run. This file is the OTU table for the blanks including their annotation based on the same criteria outlined in the manuscript. -
Run7
Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer... -
Taxonomic assignments for all reads reported in figure 2
This excel file contains the meta data for all sequenced reads with their taxonomic assignment reported in figure 2 as well as the file used to construct table 1. Worksheet... -
Predator Sample by OTU
Sequence counts in individual scat samples matching reference sequences of extant carnivores in the Santa Cruz Mountains. Scat samples were collected by citizen scientists on... -
raw data size-fractionated 20161206
OTU table (97% sequence similarity threshold after quality filtered) and the raw physico-chemical parameters -
Metadata file
A metadata file describing the contents of the data. There are six data files in total associated with this dataset. This metadata file provides background information on each... -
Run 1
Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer... -
Run1
Compressed file containing: 1)Forward sequence file 2)Reverse sequence file 3)File with experiment name, sample name and the tags, the forward primer and the reverse primer... -
2_CPR_Final_Data
Summaries including DNA sequence counts for samples analysed in the paper and the taxa identified using morphology These files are called in the r code (2) below. -
Run2
Compressed file containing: 1)Forward sequence file 2)Reverse sequence file 3)File with experiment name, sample name and the tags, the forward primer and the reverse primer... -
Overview of results.
Table shows the fish families detected by trawling and eDNA, respectively, as well as lower taxonomic assignments within each family. For each taxon, the total catch number of... -
dedup_wf_001--cd64f47e51eb0a5c9d9275d5ff4b6b28
Table of OTUs (rows) by sample (columns) after bioinformatics pipeline. See "OTUs fasta file" for representative sequences of each OTU. See "metadata file" to match library and... -
Run4
Compressed file containing: 1) Forward sequence file 2) Reverse sequence file 3) File with experiment name, sample name and the tags, the forward primer and the reverse primer...
